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Aliases for LINC02243 Gene

Subcategory (RNA class) for LINC02243 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02243 Gene

  • Long Intergenic Non-Protein Coding RNA 2243 2 3
  • RP3-473B4.3 5

External Ids for LINC02243 Gene

Summaries for LINC02243 Gene

GeneCards Summary for LINC02243 Gene

LINC02243 (Long Intergenic Non-Protein Coding RNA 2243) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02243 Gene

Genomics for LINC02243 Gene

Regulatory Elements for LINC02243 Gene

Enhancers for LINC02243 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG134947 1.2 Ensembl ENCODE 0.7 -0.3 -260 3.1 HDAC1 TBP PKNOX1 FOXA2 ZEB1 RARA RFX5 GATA2 ZNF366 RCOR1 RTL8B LINC02243 GC0XM134919 RNU6-616P
GH0XG134945 0.4 ENCODE 0.7 -3.0 -2951 1.8 ZNF121 SAGE4P RTL8B LINC02243 RNU6-616P GC0XM134919
GH0XG134935 0.7 Ensembl ENCODE 0.4 -13.1 -13140 1.8 SOX13 ZNF366 RTL8B LINC02243 GC0XM134919 RNU6-616P
GH0XG134931 0.6 ENCODE 0.4 -16.1 -16140 2.9 SOX13 ZNF146 JUND FOXA2 SAP130 GLIS1 TCF7 MIER2 REST TCF7L2 SMIM10 RNU6-616P GC0XM134919 LINC02243
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02243 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02243 Gene

Chromosome:
X
Start:
134,949,549 bp from pter
End:
134,953,382 bp from pter
Size:
3,834 bases
Orientation:
Plus strand

Genomic View for LINC02243 Gene

Genes around LINC02243 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02243 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02243 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02243 Gene

Proteins for LINC02243 Gene

Post-translational modifications for LINC02243 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02243 Gene

Domains & Families for LINC02243 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02243 Gene

Function for LINC02243 Gene

Phenotypes for LINC02243 Gene

GenomeRNAi human phenotypes for LINC02243:
genes like me logo Genes that share phenotypes with LINC02243: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02243 Gene

Localization for LINC02243 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02243 Gene

Pathways & Interactions for LINC02243 Gene

SuperPathways for LINC02243 Gene

No Data Available

Interacting Proteins for LINC02243 Gene

Gene Ontology (GO) - Biological Process for LINC02243 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02243 Gene

Drugs & Compounds for LINC02243 Gene

No Compound Related Data Available

Transcripts for LINC02243 Gene

mRNA/cDNA for LINC02243 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02243 Gene

No ASD Table

Relevant External Links for LINC02243 Gene

GeneLoc Exon Structure for
LINC02243
ECgene alternative splicing isoforms for
LINC02243

Expression for LINC02243 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02243 Gene

Orthologs for LINC02243 Gene

Evolution for LINC02243 Gene

ENSEMBL:
Gene Tree for LINC02243 (if available)
TreeFam:
Gene Tree for LINC02243 (if available)

No data available for Orthologs for LINC02243 Gene

Paralogs for LINC02243 Gene

No data available for Paralogs for LINC02243 Gene

Variants for LINC02243 Gene

Sequence variations from dbSNP and Humsavar for LINC02243 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000224633 -- 134,950,411(+) AGATC(A/T)TTCAA nc-transcript-variant
rs1000296746 -- 134,950,027(+) GGTCT(C/T)GAATT intron-variant
rs1001082760 -- 134,953,797(+) ATCAG(A/G)ATAAA downstream-variant-500B
rs1001133555 -- 134,953,252(+) ATCAC(-/T)GGGTA nc-transcript-variant
rs1001180262 -- 134,952,062(+) ATTAG(A/G)AGAAA intron-variant

Relevant External Links for LINC02243 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02243

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02243 Gene

Disorders for LINC02243 Gene

No disorders were found for LINC02243 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02243 Gene

Publications for LINC02243 Gene

  1. Identification of long noncoding RNAs for the detection of early stage lung squamous cell carcinoma by microarray analysis. (PMID: 28076325) Cheng Z. … Mao H. (Oncotarget 2017) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC02243 Gene

Sources for LINC02243 Gene

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