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Aliases for LINC02210 Gene

Subcategory (RNA class) for LINC02210 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02210 Gene

  • Long Intergenic Non-Protein Coding RNA 2210 2 3 5
  • CRHR1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • LINC.Tmp695175 2 3
  • Chromosome 17 Open Reading Frame 69 2
  • CRHR1 Intronic Transcript 1 2
  • CRHR1-IT1 3
  • C17orf69 3

External Ids for LINC02210 Gene

Previous HGNC Symbols for LINC02210 Gene

  • C17orf69
  • CRHR1-IT1

Summaries for LINC02210 Gene

GeneCards Summary for LINC02210 Gene

LINC02210 (Long Intergenic Non-Protein Coding RNA 2210) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02210 Gene

Genomics for LINC02210 Gene

Regulatory Elements for LINC02210 Gene

Enhancers for LINC02210 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G046189 1.8 FANTOM5 ENCODE dbSUPER 101.8 +573.2 573245 7.6 CREB3L1 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 LINC02210 LRRC37A4P KANSL1 ARL17B ENSG00000262372 LRRC37A2 KANSL1-AS1 NSFP1 RPS7P11 LRRC37A17P
GH17G046018 1.9 FANTOM5 Ensembl ENCODE dbSUPER 94 +399.8 399841 3.7 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 ZNF263 SP3 LINC02210 KANSL1 KANSL1-AS1 NSFP1 STH LRRC37A GC17P046011 GC17P046010 ENSG00000262372
GH17G045582 1.8 FANTOM5 ENCODE dbSUPER 89.8 -35.8 -35784 4.3 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 YBX1 FEZF1 ZNF2 YY1 LINC02210 LRRC37A4P KANSL1-AS1 LRRC37A2 ARL17B PLEKHM1 ACBD4 FMNL1 PIR53158 DND1P1
GH17G046100 1.6 Ensembl ENCODE dbSUPER 94.2 +481.1 481132 2.7 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 SIN3A FEZF1 ZNF2 ZNF263 LINC02210 KANSL1 LRRC37A17P PIR51062 KANSL1-AS1
GH17G046106 1.6 Ensembl ENCODE dbSUPER 93.9 +487.7 487673 2.4 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 SLC30A9 LINC02210 LRRC37A4P KANSL1 ARL17B ENSG00000262372 NSFP1 LOC101927060 RPS7P11 LRRC37A17P KANSL1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02210 on UCSC Golden Path with GeneCards custom track

Promoters for LINC02210 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000094959 173 1800 HDGF PKNOX1 ZNF48 ZEB1 EGR1 ZNF143 ZNF391 EGR2 SP3 NFYC

Genomic Location for LINC02210 Gene

Chromosome:
17
Start:
45,620,328 bp from pter
End:
45,655,156 bp from pter
Size:
34,829 bases
Orientation:
Plus strand

Genomic View for LINC02210 Gene

Genes around LINC02210 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02210 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02210 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02210 Gene

Proteins for LINC02210 Gene

Post-translational modifications for LINC02210 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02210 Gene

Domains & Families for LINC02210 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02210 Gene

Function for LINC02210 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02210 Gene

Localization for LINC02210 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02210 Gene

Pathways & Interactions for LINC02210 Gene

SuperPathways for LINC02210 Gene

No Data Available

Interacting Proteins for LINC02210 Gene

Gene Ontology (GO) - Biological Process for LINC02210 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02210 Gene

Drugs & Compounds for LINC02210 Gene

No Compound Related Data Available

Transcripts for LINC02210 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02210 Gene

No ASD Table

Relevant External Links for LINC02210 Gene

GeneLoc Exon Structure for
LINC02210
ECgene alternative splicing isoforms for
LINC02210

Expression for LINC02210 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02210 Gene

Orthologs for LINC02210 Gene

Evolution for LINC02210 Gene

ENSEMBL:
Gene Tree for LINC02210 (if available)
TreeFam:
Gene Tree for LINC02210 (if available)

No data available for Orthologs for LINC02210 Gene

Paralogs for LINC02210 Gene

No data available for Paralogs for LINC02210 Gene

Variants for LINC02210 Gene

Sequence variations from dbSNP and Humsavar for LINC02210 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000150216 -- 45,636,397(+) GGCTT(C/T)ACGAA intron-variant, nc-transcript-variant
rs1000195665 -- 45,633,188(+) TTATT(A/G)GCTTT intron-variant
rs1000238618 -- 45,619,905(+) TGTGT(A/T)TATTT upstream-variant-2KB
rs1000309110 -- 45,637,623(+) GAAGC(A/G)GACGG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000345667 -- 45,627,711(+) ATATC(C/T)CTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02210 Gene

Variant ID Type Subtype PubMed ID
esv2758691 CNV gain+loss 17122850
esv2762433 CNV gain+loss 21179565
esv3640670 CNV loss 21293372
nsv1060303 CNV gain 25217958
nsv1133406 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv457744 CNV gain 19166990
nsv575138 CNV gain 21841781
nsv833458 CNV gain 17160897

Relevant External Links for LINC02210 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02210

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02210 Gene

Disorders for LINC02210 Gene

Relevant External Links for LINC02210

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02210

No disorders were found for LINC02210 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02210 Gene

Publications for LINC02210 Gene

  1. Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies. (PMID: 21292315) . … Wood N.W. (Lancet 2011) 3 64
  2. The transcriptome of human CD34+ hematopoietic stem-progenitor cells. (PMID: 19416867) Kim Y.C. … Wang S.M. (Proc. Natl. Acad. Sci. U.S.A. 2009) 3 64
  3. Genome-wide association study reveals genetic risk underlying Parkinson's disease. (PMID: 19915575) SimA^n-SA!nchez J. … Gasser T. (Nat. Genet. 2009) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC02210 Gene

Sources for LINC02210 Gene

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