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Aliases for LINC02209 Gene

Subcategory (RNA class) for LINC02209 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02209 Gene

  • Long Intergenic Non-Protein Coding RNA 2209 2 3 5
  • Family With Sequence Similarity 183 Member C, Pseudogene 2 3
  • Family With Sequence Similarity 183, Member C, Pseudogene 2
  • FAM183CP 3

External Ids for LINC02209 Gene

Previous HGNC Symbols for LINC02209 Gene

  • FAM183CP

Summaries for LINC02209 Gene

GeneCards Summary for LINC02209 Gene

LINC02209 (Long Intergenic Non-Protein Coding RNA 2209) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02209 Gene

Genomics for LINC02209 Gene

Regulatory Elements for LINC02209 Gene

Enhancers for LINC02209 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G029919 0.7 ENCODE 0.7 -1.0 -954 1.6 JUN MAX RAD21 RFX5 GTF3C2 POLR3A SMC3 RCOR1 MAFK TCF7L2 ENSG00000259366 GTF2E2 LINC02209 ENSG00000253604
GH08G029925 1 Ensembl ENCODE 0.4 +5.1 5064 1.7 NFIB JUN RAD21 THRB GATA3 CTBP1 GATA2 FOS RCOR1 EZH2 LINC02209 MIR3148
GH08G029955 0.7 ENCODE 0.3 +34.4 34366 1.1 FOXA2 ZNF266 NCOR1 FOS NR2F6 CREM SOX5 ZNF3 SP5 KLF6 RNU6-1218P DUSP4 MIR3148 LINC02209
GH08G029935 0.5 ENCODE 0.4 +15.0 15043 2.1 RBAK TAF1 STAT3 EP300 RNU6-1218P DUSP4 UBXN8 LINC02209 MIR3148
GH08G029909 0.4 ENCODE 0.4 -11.2 -11210 0.9 JUND ENSG00000253604 LINC02209
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02209 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02209 Gene

Chromosome:
8
Start:
29,921,513 bp from pter
End:
29,953,724 bp from pter
Size:
32,212 bases
Orientation:
Plus strand

Genomic View for LINC02209 Gene

Genes around LINC02209 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02209 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02209 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02209 Gene

Proteins for LINC02209 Gene

Post-translational modifications for LINC02209 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02209 Gene

Domains & Families for LINC02209 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02209 Gene

Function for LINC02209 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02209 Gene

Localization for LINC02209 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02209 Gene

Pathways & Interactions for LINC02209 Gene

SuperPathways for LINC02209 Gene

No Data Available

Interacting Proteins for LINC02209 Gene

Gene Ontology (GO) - Biological Process for LINC02209 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02209 Gene

Drugs & Compounds for LINC02209 Gene

No Compound Related Data Available

Transcripts for LINC02209 Gene

mRNA/cDNA for LINC02209 Gene

(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02209 Gene

No ASD Table

Relevant External Links for LINC02209 Gene

GeneLoc Exon Structure for
LINC02209
ECgene alternative splicing isoforms for
LINC02209

Expression for LINC02209 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC02209 Gene:

LINC02209
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02209 Gene

Orthologs for LINC02209 Gene

Evolution for LINC02209 Gene

ENSEMBL:
Gene Tree for LINC02209 (if available)
TreeFam:
Gene Tree for LINC02209 (if available)

No data available for Orthologs for LINC02209 Gene

Paralogs for LINC02209 Gene

No data available for Paralogs for LINC02209 Gene

Variants for LINC02209 Gene

Sequence variations from dbSNP and Humsavar for LINC02209 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000039186 -- 29,930,737(+) CTGTA(A/G)TATGA intron-variant
rs1000045736 -- 29,939,802(+) GATAT(A/G)GAAGT intron-variant
rs1000060542 -- 29,951,223(+) TGGAA(-/T)TATTG intron-variant
rs1000127162 -- 29,952,094(+) ATTTA(-/T)TTTTT intron-variant
rs1000128330 -- 29,933,641(+) TTGAA(C/T)GCATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02209 Gene

Variant ID Type Subtype PubMed ID
esv3616779 CNV loss 21293372

Relevant External Links for LINC02209 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02209

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02209 Gene

Disorders for LINC02209 Gene

Relevant External Links for LINC02209

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02209

No disorders were found for LINC02209 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02209 Gene

Publications for LINC02209 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for LINC02209 Gene

Sources for LINC02209 Gene

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