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Aliases for LINC02175 Gene

Subcategory (RNA class) for LINC02175 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02175 Gene

  • Long Intergenic Non-Protein Coding RNA 2175 2 3 5

External Ids for LINC02175 Gene

Summaries for LINC02175 Gene

GeneCards Summary for LINC02175 Gene

LINC02175 (Long Intergenic Non-Protein Coding RNA 2175) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02175 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02175 Gene

Genomics for LINC02175 Gene

Regulatory Elements for LINC02175 Gene


Enhancers around LINC02175 on UCSC Golden Path with GeneCards custom track

Promoters for LINC02175 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000084706 263 1201 HDGF PKNOX1 ATF1 ARID4B SIN3A YY1 GLIS2 ELK1 ATF7 SP3

Genomic Location for LINC02175 Gene

Chromosome:
16
Start:
25,066,937 bp from pter
End:
25,068,955 bp from pter
Size:
2,019 bases
Orientation:
Plus strand

Genomic View for LINC02175 Gene

Genes around LINC02175 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02175 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02175 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02175 Gene

Proteins for LINC02175 Gene

Post-translational modifications for LINC02175 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02175 Gene

Domains & Families for LINC02175 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02175 Gene

Function for LINC02175 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02175 Gene

Localization for LINC02175 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02175 Gene

Pathways & Interactions for LINC02175 Gene

SuperPathways for LINC02175 Gene

No Data Available

Interacting Proteins for LINC02175 Gene

Gene Ontology (GO) - Biological Process for LINC02175 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02175 Gene

Drugs & Compounds for LINC02175 Gene

No Compound Related Data Available

Transcripts for LINC02175 Gene

mRNA/cDNA for LINC02175 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02175 Gene

No ASD Table

Relevant External Links for LINC02175 Gene

GeneLoc Exon Structure for
LINC02175
ECgene alternative splicing isoforms for
LINC02175

Expression for LINC02175 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02175 Gene

Orthologs for LINC02175 Gene

Evolution for LINC02175 Gene

ENSEMBL:
Gene Tree for LINC02175 (if available)
TreeFam:
Gene Tree for LINC02175 (if available)

No data available for Orthologs for LINC02175 Gene

Paralogs for LINC02175 Gene

No data available for Paralogs for LINC02175 Gene

Variants for LINC02175 Gene

Sequence variations from dbSNP and Humsavar for LINC02175 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000253313 -- 25,067,611(+) TGAAC(A/C)CCGTG nc-transcript-variant
rs1000539502 -- 25,067,588(+) TGGGC(A/G)GTGAC nc-transcript-variant
rs1000969657 -- 25,069,344(+) ACCAC(C/T)GCACT intron-variant
rs1001258794 -- 25,068,062(+) CTCTC(C/T)AATAA nc-transcript-variant
rs1001316802 -- 25,067,066(+) GCACC(A/G)GGCTT nc-transcript-variant

Relevant External Links for LINC02175 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02175

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02175 Gene

Disorders for LINC02175 Gene

Relevant External Links for LINC02175

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02175

No disorders were found for LINC02175 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02175 Gene

Publications for LINC02175 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LINC02175 Gene

Sources for LINC02175 Gene

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