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Aliases for LINC02171 Gene

Subcategory (RNA class) for LINC02171 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC02171 Gene

  • Long Intergenic Non-Protein Coding RNA 2171 2 3 5

External Ids for LINC02171 Gene

Summaries for LINC02171 Gene

GeneCards Summary for LINC02171 Gene

LINC02171 (Long Intergenic Non-Protein Coding RNA 2171) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02171 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02171 Gene

Genomics for LINC02171 Gene

Regulatory Elements for LINC02171 Gene

Enhancers for LINC02171 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H003645 0.7 ENCODE 0.3 +32.1 32082 1.3 KLF1 MAX ZIC2 FOSL1 ZBTB48 EGR1 SCRT2 RCOR1 FOSL2 FOS ENSG00000261643 LOC105374357 LINC02171
GH04H003657 0.4 ENCODE 0.4 +19.8 19773 0.7 FOS LOC105374357 LINC02171
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02171 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02171 Gene

Genomic Locations for LINC02171 Gene
4,263 bases
Minus strand

Genomic View for LINC02171 Gene

Genes around LINC02171 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02171 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02171 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02171 Gene

Proteins for LINC02171 Gene

Post-translational modifications for LINC02171 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02171 Gene

Domains & Families for LINC02171 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02171 Gene

Function for LINC02171 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02171 Gene

Localization for LINC02171 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02171 Gene

Pathways & Interactions for LINC02171 Gene

SuperPathways for LINC02171 Gene

No Data Available

Interacting Proteins for LINC02171 Gene

Gene Ontology (GO) - Biological Process for LINC02171 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC02171 Gene

Drugs & Compounds for LINC02171 Gene

No Compound Related Data Available

Transcripts for LINC02171 Gene

mRNA/cDNA for LINC02171 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02171 Gene

No ASD Table

Relevant External Links for LINC02171 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC02171 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02171 Gene

Orthologs for LINC02171 Gene

Evolution for LINC02171 Gene

Gene Tree for LINC02171 (if available)
Gene Tree for LINC02171 (if available)

No data available for Orthologs for LINC02171 Gene

Paralogs for LINC02171 Gene

No data available for Paralogs for LINC02171 Gene

Variants for LINC02171 Gene

Sequence variations from dbSNP and Humsavar for LINC02171 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10001474 -- 3,677,481(+) GGTAC(A/C/T)CAGGC nc-transcript-variant
rs1000205982 -- 3,677,595(+) AGGGA(C/T)AGATG nc-transcript-variant
rs1000341380 -- 3,678,766(+) AGAGA(A/G)GAGGT upstream-variant-2KB
rs1001591292 -- 3,674,038(+) CAGCC(C/T)GCACC intron-variant
rs1001822273 -- 3,679,253(+) GGAAG(G/T)GTCCG upstream-variant-2KB

Relevant External Links for LINC02171 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02171 Gene

Disorders for LINC02171 Gene

Relevant External Links for LINC02171

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC02171 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02171 Gene

Publications for LINC02171 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC02171 Gene

Sources for LINC02171 Gene

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