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Aliases for LINC02078 Gene

Subcategory (RNA class) for LINC02078 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02078 Gene

  • Long Intergenic Non-Protein Coding RNA 2078 2 3 5
  • CTD-2116F7.1 3
  • HP09025 3

External Ids for LINC02078 Gene

Summaries for LINC02078 Gene

GeneCards Summary for LINC02078 Gene

LINC02078 (Long Intergenic Non-Protein Coding RNA 2078) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02078 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02078 Gene

Genomics for LINC02078 Gene

Regulatory Elements for LINC02078 Gene

Enhancers for LINC02078 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H079706 0.8 Ensembl 0.7 +0.7 716 2 CTCF LEF1 KLF1 RB1 ZBTB21 KLF17 SIN3A ZIC2 RAD21 GLIS2 ENSG00000262768 LINC02078 PIR42685
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02078 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02078 Gene

Chromosome:
17
Start:
79,707,266 bp from pter
End:
79,712,317 bp from pter
Size:
5,052 bases
Orientation:
Plus strand

Genomic View for LINC02078 Gene

Genes around LINC02078 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02078 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02078 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02078 Gene

Proteins for LINC02078 Gene

Post-translational modifications for LINC02078 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02078 Gene

Domains & Families for LINC02078 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02078 Gene

Function for LINC02078 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02078 Gene

Localization for LINC02078 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02078 Gene

Pathways & Interactions for LINC02078 Gene

SuperPathways for LINC02078 Gene

No Data Available

Interacting Proteins for LINC02078 Gene

Gene Ontology (GO) - Biological Process for LINC02078 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02078 Gene

Drugs & Compounds for LINC02078 Gene

No Compound Related Data Available

Transcripts for LINC02078 Gene

mRNA/cDNA for LINC02078 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02078 Gene

No ASD Table

Relevant External Links for LINC02078 Gene

GeneLoc Exon Structure for
LINC02078
ECgene alternative splicing isoforms for
LINC02078

Expression for LINC02078 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02078 Gene

Orthologs for LINC02078 Gene

Evolution for LINC02078 Gene

ENSEMBL:
Gene Tree for LINC02078 (if available)
TreeFam:
Gene Tree for LINC02078 (if available)

No data available for Orthologs for LINC02078 Gene

Paralogs for LINC02078 Gene

No data available for Paralogs for LINC02078 Gene

Variants for LINC02078 Gene

Sequence variations from dbSNP and Humsavar for LINC02078 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1002183367 -- 79,706,071(+) CGATC(A/G)AAAGC upstream-variant-2KB
rs1002311074 -- 79,706,253(+) GCTCC(C/T)CACGC upstream-variant-2KB
rs1004917322 -- 79,705,533(+) CCCTA(C/T)GAGGT upstream-variant-2KB
rs1005971567 -- 79,706,260(+) ACGCC(C/T)TAGCT upstream-variant-2KB
rs1009678056 -- 79,705,928(+) CCCTG(C/T)GTCTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC02078 Gene

Variant ID Type Subtype PubMed ID
dgv590e214 CNV loss 21293372
esv28226 CNV gain+loss 19812545
nsv952381 CNV deletion 24416366
nsv9594 CNV gain 18304495

Relevant External Links for LINC02078 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02078

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02078 Gene

Disorders for LINC02078 Gene

Relevant External Links for LINC02078

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02078
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02078

No disorders were found for LINC02078 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02078 Gene

Publications for LINC02078 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 60

Products for LINC02078 Gene

Sources for LINC02078 Gene

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