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Aliases for LINC02076 Gene

Subcategory (RNA class) for LINC02076 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02076 Gene

  • Long Intergenic Non-Protein Coding RNA 2076 2 3
  • FLJ35934 5

External Ids for LINC02076 Gene

Summaries for LINC02076 Gene

GeneCards Summary for LINC02076 Gene

LINC02076 (Long Intergenic Non-Protein Coding RNA 2076) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02076 Gene

Genomics for LINC02076 Gene

Regulatory Elements for LINC02076 Gene

Enhancers for LINC02076 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F018410 0.6 ENCODE 0.8 +0.1 91 1.5 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF302 ZNF143 MFAP4 FOXO3B DRG2 SMCR8 SHMT1 TVP23B LLGL1 NOS2P2 YWHAEP2 TBC1D3P4
GH17F018403 0.4 Ensembl 0.4 -7.7 -7658 0.6 ZNF121 LLGL1 PIR36245 LINC02076
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC02076 on UCSC Golden Path with GeneCards custom track

Promoters for LINC02076 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001805653 541 3401 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF302 ZNF143

Genomic Location for LINC02076 Gene

Chromosome:
17
Start:
18,411,159 bp from pter
End:
18,414,388 bp from pter
Size:
3,230 bases
Orientation:
Plus strand

Genomic View for LINC02076 Gene

Genes around LINC02076 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02076 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02076 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02076 Gene

Proteins for LINC02076 Gene

Post-translational modifications for LINC02076 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02076 Gene

Domains & Families for LINC02076 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02076 Gene

Function for LINC02076 Gene

Phenotypes for LINC02076 Gene

GenomeRNAi human phenotypes for LINC02076:
genes like me logo Genes that share phenotypes with LINC02076: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02076 Gene

Localization for LINC02076 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02076 Gene

Pathways & Interactions for LINC02076 Gene

SuperPathways for LINC02076 Gene

No Data Available

Interacting Proteins for LINC02076 Gene

Gene Ontology (GO) - Biological Process for LINC02076 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02076 Gene

Transcripts for LINC02076 Gene

mRNA/cDNA for LINC02076 Gene

(2) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC02076 Gene

FLJ35934:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02076 Gene

No ASD Table

Relevant External Links for LINC02076 Gene

GeneLoc Exon Structure for
LINC02076
ECgene alternative splicing isoforms for
LINC02076

Expression for LINC02076 Gene

SOURCE GeneReport for Unigene cluster for LINC02076 Gene:

Hs.375092
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC02076 Gene

Orthologs for LINC02076 Gene

Evolution for LINC02076 Gene

ENSEMBL:
Gene Tree for LINC02076 (if available)
TreeFam:
Gene Tree for LINC02076 (if available)

No data available for Orthologs for LINC02076 Gene

Paralogs for LINC02076 Gene

No data available for Paralogs for LINC02076 Gene

Variants for LINC02076 Gene

Sequence variations from dbSNP and Humsavar for LINC02076 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1092675 -- 18,413,304(-) caaaa(A/C)aCAAC intron-variant
rs1092738 -- 18,413,279(-) CAAAA(A/C)CCAGG intron-variant
rs111547240 -- 18,409,495(+) TTCCT(-/GACTCATAGGCG)GTGCT upstream-variant-2KB
rs111819852 -- 18,413,281(+) GGTTT(-/TTG)TTGTT intron-variant
rs112818264 -- 18,413,377(+) GCTCC(A/G)CCTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02076 Gene

Variant ID Type Subtype PubMed ID
dgv3110n100 CNV gain 25217958
dgv3111n100 CNV gain 25217958
dgv3112n100 CNV gain+loss 25217958
dgv3113n100 CNV loss 25217958
dgv55e203 CNV gain+loss 21179565
esv2758677 CNV gain+loss 17122850
nsv1066489 CNV gain 25217958
nsv155 OTHER inversion 15895083
nsv428333 CNV gain 18775914
nsv469661 CNV gain 16826518
nsv499114 OTHER inversion 21111241
nsv827913 CNV gain 20364138
nsv827914 CNV gain 20364138
nsv833386 CNV gain 17160897
nsv833387 CNV loss 17160897
nsv833388 CNV loss 17160897
nsv9504 CNV gain+loss 18304495
nsv962275 CNV duplication 23825009

Relevant External Links for LINC02076 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02076

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02076 Gene

Disorders for LINC02076 Gene

Relevant External Links for LINC02076

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02076

No disorders were found for LINC02076 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02076 Gene

Publications for LINC02076 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC02076 Gene

Sources for LINC02076 Gene

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