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Aliases for LINC02075 Gene

Subcategory (RNA class) for LINC02075 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02075 Gene

  • Long Intergenic Non-Protein Coding RNA 2075 2 3 5

External Ids for LINC02075 Gene

Summaries for LINC02075 Gene

GeneCards Summary for LINC02075 Gene

LINC02075 (Long Intergenic Non-Protein Coding RNA 2075) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02075 Gene

Genomics for LINC02075 Gene

Regulatory Elements for LINC02075 Gene

Enhancers for LINC02075 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G049453 1 ENCODE 0.4 +7.4 7395 1.0 HDGF PKNOX1 CREB3L1 ARID4B SIN3A GLIS2 SP3 SP5 TBX21 RCOR2 ENSG00000207127 PHB NGFR RPL21P124 ENSG00000250186 SPOP DLX3 ENSG00000248172 LINC02075 EIF4EP2
GH17G049469 0.8 Ensembl ENCODE 0.4 -9.2 -9164 2.3 CTCF NFIC KLF1 ZBTB33 ZIC2 EZH2 NGFR PHB ENSG00000250186 RPL21P124 ENSG00000248172 DLX3 LINC02075
GH17G049455 0.7 ENCODE 0.4 +5.5 5455 1.2 ZNF263 BHLHE40 KLF17 NFXL1 ZNF398 ZKSCAN1 SREBF1 ZFHX2 ZNF341 SCRT2 ENSG00000207127 PHB NGFR ENSG00000250186 RPL21P124 LINC02075 EIF4EP2
GH17G049438 0.9 Ensembl ENCODE 0.3 +22.3 22301 2.7 ZNF202 CTCF PKNOX1 ZNF362 BHLHE40 ZNF398 ZNF623 JUND KDM1A FOS PHB ENSG00000207127 NGFR ENSG00000250186 RPL21P124 LOC100288866 NXPH3 PHOSPHO1 DLX3 ENSG00000248172
GH17G049486 0.9 Ensembl ENCODE 0.3 -24.9 -24877 1.2 ZNF263 RBBP5 GABPA ZNF121 POLR2A GABPB1 IKZF1 EZH2 NXPH3 LOC100288866 NGFR LINC02075
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02075 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02075 Gene

Chromosome:
17
Start:
49,457,861 bp from pter
End:
49,461,749 bp from pter
Size:
3,889 bases
Orientation:
Minus strand

Genomic View for LINC02075 Gene

Genes around LINC02075 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02075 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02075 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02075 Gene

Proteins for LINC02075 Gene

Post-translational modifications for LINC02075 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02075 Gene

Domains & Families for LINC02075 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02075 Gene

Function for LINC02075 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02075 Gene

Localization for LINC02075 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC02075 Gene

Pathways & Interactions for LINC02075 Gene

SuperPathways for LINC02075 Gene

No Data Available

Interacting Proteins for LINC02075 Gene

Gene Ontology (GO) - Biological Process for LINC02075 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02075 Gene

Drugs & Compounds for LINC02075 Gene

No Compound Related Data Available

Transcripts for LINC02075 Gene

mRNA/cDNA for LINC02075 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02075 Gene

No ASD Table

Relevant External Links for LINC02075 Gene

GeneLoc Exon Structure for
LINC02075
ECgene alternative splicing isoforms for
LINC02075

Expression for LINC02075 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02075 Gene

Orthologs for LINC02075 Gene

Evolution for LINC02075 Gene

ENSEMBL:
Gene Tree for LINC02075 (if available)
TreeFam:
Gene Tree for LINC02075 (if available)

No data available for Orthologs for LINC02075 Gene

Paralogs for LINC02075 Gene

No data available for Paralogs for LINC02075 Gene

Variants for LINC02075 Gene

Sequence variations from dbSNP and Humsavar for LINC02075 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000021953 -- 49,458,136(+) TTTCT(C/T)ACCTG nc-transcript-variant
rs1000033396 -- 49,457,944(+) TGGAG(C/G)GGGTG nc-transcript-variant
rs1000076245 -- 49,459,272(+) TGCTG(C/T)CAGTT intron-variant
rs1000572620 -- 49,462,157(+) ACCTC(A/C)ACCTC upstream-variant-2KB
rs1000631099 -- 49,463,365(+) CTATT(C/T)GGCCT upstream-variant-2KB

Relevant External Links for LINC02075 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02075

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02075 Gene

Disorders for LINC02075 Gene

No disorders were found for LINC02075 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02075 Gene

Publications for LINC02075 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC02075 Gene

Sources for LINC02075 Gene

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