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Aliases for LINC02071 Gene

Subcategory (RNA class) for LINC02071 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02071 Gene

  • Long Intergenic Non-Protein Coding RNA 2071 2 3 5

External Ids for LINC02071 Gene

Summaries for LINC02071 Gene

GeneCards Summary for LINC02071 Gene

LINC02071 (Long Intergenic Non-Protein Coding RNA 2071) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02071 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02071 Gene

Genomics for LINC02071 Gene

Regulatory Elements for LINC02071 Gene

Enhancers for LINC02071 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H050862 2.4 ENCODE dbSUPER 14.6 +470.0 470023 8.5 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 MBTD1 LUC7L3 ENSG00000249870 ENSG00000206824 ENSG00000249658 LINC02071 TOB1-AS1 ENSG00000247011 ENSG00000251665 WFIKKN2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02071 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02071 Gene

Genomic Locations for LINC02071 Gene
chr17:51,312,609-51,335,165
(GRCh38/hg38)
Size:
22,557 bases
Orientation:
Minus strand
chr17:49,389,970-49,412,526
(GRCh37/hg19)

Genomic View for LINC02071 Gene

Genes around LINC02071 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02071 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02071 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02071 Gene

Proteins for LINC02071 Gene

Post-translational modifications for LINC02071 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02071 Gene

Domains & Families for LINC02071 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02071 Gene

Function for LINC02071 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02071 Gene

Localization for LINC02071 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02071 Gene

Pathways & Interactions for LINC02071 Gene

SuperPathways for LINC02071 Gene

No Data Available

Interacting Proteins for LINC02071 Gene

Gene Ontology (GO) - Biological Process for LINC02071 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02071 Gene

Drugs & Compounds for LINC02071 Gene

No Compound Related Data Available

Transcripts for LINC02071 Gene

mRNA/cDNA for LINC02071 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02071 Gene

No ASD Table

Relevant External Links for LINC02071 Gene

GeneLoc Exon Structure for
LINC02071
ECgene alternative splicing isoforms for
LINC02071

Expression for LINC02071 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02071 Gene

Orthologs for LINC02071 Gene

Evolution for LINC02071 Gene

ENSEMBL:
Gene Tree for LINC02071 (if available)
TreeFam:
Gene Tree for LINC02071 (if available)

No data available for Orthologs for LINC02071 Gene

Paralogs for LINC02071 Gene

No data available for Paralogs for LINC02071 Gene

Variants for LINC02071 Gene

Sequence variations from dbSNP and Humsavar for LINC02071 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000130149 -- 51,314,023(+) TGCTG(A/G)GATTA intron-variant
rs1000224775 -- 51,320,168(+) TTGTG(C/T)CTGAA intron-variant
rs1000282222 -- 51,334,492(+) CGGGT(A/G)CTCAG nc-transcript-variant
rs1000369224 -- 51,326,754(+) CTTCA(A/G)TATTT intron-variant
rs1000473278 -- 51,332,765(+) TTAAT(C/T)TCCTG intron-variant

Relevant External Links for LINC02071 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02071

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02071 Gene

Disorders for LINC02071 Gene

Relevant External Links for LINC02071

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02071

No disorders were found for LINC02071 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02071 Gene

Publications for LINC02071 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC02071 Gene

Sources for LINC02071 Gene

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