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Aliases for LINC02042 Gene

Subcategory (RNA class) for LINC02042 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02042 Gene

  • Long Intergenic Non-Protein Coding RNA 2042 2 3 5

External Ids for LINC02042 Gene

Summaries for LINC02042 Gene

GeneCards Summary for LINC02042 Gene

LINC02042 (Long Intergenic Non-Protein Coding RNA 2042) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02042 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02042 Gene

Genomics for LINC02042 Gene

Regulatory Elements for LINC02042 Gene

Enhancers for LINC02042 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H112089 1.4 Ensembl ENCODE dbSUPER 14.6 +657.6 657575 3 ZSCAN4 INSM2 KLF17 FEZF1 RFX5 GLIS2 ZNF366 ZSCAN5C SCRT2 ZNF391 ENSG00000261488 LINC02042 ENSG00000239311 MIR567 CD200R1L ABHD10 C3orf52 GC03P112114
GH03H112746 0.8 FANTOM5 0.7 +2.4 2398 0 PKNOX1 ATF1 TAL1 FOSL1 TCF12 CTBP1 NCOR1 NFE2 CREM SMARCE1 CD200R1 CCDC80 LINC02042 LOC100653395
GH03H112767 1.2 FANTOM5 Ensembl ENCODE 0.4 -18.1 -18086 0 POLR2A IKZF1 CEBPB CEBPG RUNX3 IKZF2 SPI1 ENSG00000242770 CD200R1L ATG3 LINC02042
GH03H112773 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -27.7 -27716 7 NFIB JUN MAX CEBPG RFX5 GATA3 FOSL2 FOS TRIM24 RUNX3 CD200R1 ENSG00000242770 CD200R1L ATG3 LINC02042
GH03H112768 1.4 Ensembl ENCODE dbSUPER 0.3 -20.6 -20641 1 PKNOX1 ATF1 TCF12 SCRT2 ATF7 CAVIN1 JUNB ZNF592 MEF2D TFDP1 ENSG00000242770 CD200R1L LINC02042
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC02042 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC02042 Gene

Chromosome:
3
Start:
112,736,447 bp from pter
End:
112,749,319 bp from pter
Size:
12,873 bases
Orientation:
Minus strand

Genomic View for LINC02042 Gene

Genes around LINC02042 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02042 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02042 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02042 Gene

Proteins for LINC02042 Gene

Post-translational modifications for LINC02042 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02042 Gene

Domains & Families for LINC02042 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02042 Gene

Function for LINC02042 Gene

Phenotypes From GWAS Catalog for LINC02042 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02042 Gene

Localization for LINC02042 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02042 Gene

Pathways & Interactions for LINC02042 Gene

SuperPathways for LINC02042 Gene

No Data Available

Interacting Proteins for LINC02042 Gene

Gene Ontology (GO) - Biological Process for LINC02042 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02042 Gene

Drugs & Compounds for LINC02042 Gene

No Compound Related Data Available

Transcripts for LINC02042 Gene

mRNA/cDNA for LINC02042 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02042 Gene

No ASD Table

Relevant External Links for LINC02042 Gene

GeneLoc Exon Structure for
LINC02042
ECgene alternative splicing isoforms for
LINC02042

Expression for LINC02042 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02042 Gene

Orthologs for LINC02042 Gene

Evolution for LINC02042 Gene

ENSEMBL:
Gene Tree for LINC02042 (if available)
TreeFam:
Gene Tree for LINC02042 (if available)

No data available for Orthologs for LINC02042 Gene

Paralogs for LINC02042 Gene

No data available for Paralogs for LINC02042 Gene

Variants for LINC02042 Gene

Sequence variations from dbSNP and Humsavar for LINC02042 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000196135 -- 112,747,553(+) GGGGG(G/T)GTGCA intron-variant
rs1000446736 -- 112,740,662(+) CTGAC(C/G)TCAGG nc-transcript-variant
rs1000591493 -- 112,740,421(+) CCCAT(A/G)GATTT nc-transcript-variant
rs1000978847 -- 112,743,564(+) AATCC(C/T)AGCTA intron-variant
rs1001358421 -- 112,737,214(+) CATTC(C/T)AGAAA intron-variant

Relevant External Links for LINC02042 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02042

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02042 Gene

Disorders for LINC02042 Gene

Relevant External Links for LINC02042

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC02042

No disorders were found for LINC02042 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02042 Gene

Publications for LINC02042 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC02042 Gene

Sources for LINC02042 Gene

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