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Aliases for LINC01994 Gene

Subcategory (RNA class) for LINC01994 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01994 Gene

  • Long Intergenic Non-Protein Coding RNA 1994 2 3
  • Uncharacterized LOC401103 5
  • FLJ46066 5

External Ids for LINC01994 Gene

Summaries for LINC01994 Gene

GeneCards Summary for LINC01994 Gene

LINC01994 (Long Intergenic Non-Protein Coding RNA 1994) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01994 Gene

Genomics for LINC01994 Gene

Regulatory Elements for LINC01994 Gene

Enhancers for LINC01994 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F182499 0.2 ENCODE 0.4 -14.1 -14053 1.0 RING1 SMARCA4 POU5F1 KDM1A LINC01994 LINC01995
GH03F182501 0.6 ENCODE 0.3 -15.5 -15515 1.2 GATAD2A MTA2 RNF2 FOXA3 HLF EBF1 SMARCA4 CEBPA BCL6 FOXP2 LINC01994 LINC01995
GH03F182517 1 ENCODE 0.3 -30.8 -30764 0.2 TBL1XR1 MTA2 BHLHE40 USF2 BMI1 EBF1 TBX21 EP300 RAD51 IKZF1 LINC01995 LINC01994
GH03F182525 0.2 ENCODE 0.3 -38.9 -38864 0.2 PKNOX1 ESRRA FEZF1 ZNF843 ZNF217 CTBP1 ZNF766 GATA3 ZFP3 ZNF18 LINC01995 LINC01994
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC01994 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01994 Gene

Chromosome:
3
Start:
182,446,970 bp from pter
End:
182,486,364 bp from pter
Size:
39,395 bases
Orientation:
Minus strand

Genomic View for LINC01994 Gene

Genes around LINC01994 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01994 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01994 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01994 Gene

Proteins for LINC01994 Gene

Post-translational modifications for LINC01994 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01994 Gene

Domains & Families for LINC01994 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01994 Gene

Function for LINC01994 Gene

Phenotypes for LINC01994 Gene

GenomeRNAi human phenotypes for LINC01994:
genes like me logo Genes that share phenotypes with LINC01994: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01994 Gene

Localization for LINC01994 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01994 Gene

Pathways & Interactions for LINC01994 Gene

SuperPathways for LINC01994 Gene

No Data Available

Interacting Proteins for LINC01994 Gene

Gene Ontology (GO) - Biological Process for LINC01994 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01994 Gene

Transcripts for LINC01994 Gene

mRNA/cDNA for LINC01994 Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC01994 Gene

Uncharacterized LOC401103:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01994 Gene

No ASD Table

Relevant External Links for LINC01994 Gene

GeneLoc Exon Structure for
LINC01994
ECgene alternative splicing isoforms for
LINC01994

Expression for LINC01994 Gene

SOURCE GeneReport for Unigene cluster for LINC01994 Gene:

Hs.591304
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01994 Gene

Orthologs for LINC01994 Gene

Evolution for LINC01994 Gene

ENSEMBL:
Gene Tree for LINC01994 (if available)
TreeFam:
Gene Tree for LINC01994 (if available)

No data available for Orthologs for LINC01994 Gene

Paralogs for LINC01994 Gene

No data available for Paralogs for LINC01994 Gene

Variants for LINC01994 Gene

Sequence variations from dbSNP and Humsavar for LINC01994 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10617054 -- 182,483,936(+) GTTTG(-/TTTG)CCTTG intron-variant
rs10621509 -- 182,483,923(+) TTGTT(-/GTT)TGTTT intron-variant
rs10937089 -- 182,481,454(+) TTTTC(-/T)TTTTT intron-variant
rs111387043 -- 182,468,559(+) GTTTG(-/T)TGTAG intron-variant
rs111394055 -- 182,453,532(+) CCAAC(C/T)TTTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01994 Gene

Variant ID Type Subtype PubMed ID
dgv843n67 CNV gain 20364138
esv2677172 CNV deletion 23128226
esv3563002 CNV deletion 23714750
esv3569145 CNV loss 25503493
esv3598910 CNV loss 21293372
esv3598911 CNV loss 21293372
nsv508262 CNV deletion 20534489
nsv821489 CNV deletion 20802225
nsv963385 CNV duplication 23825009
nsv963386 CNV duplication 23825009

Relevant External Links for LINC01994 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01994

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01994 Gene

Disorders for LINC01994 Gene

Relevant External Links for LINC01994

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01994

No disorders were found for LINC01994 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01994 Gene

Publications for LINC01994 Gene

No publications were found for LINC01994 Gene.

Products for LINC01994 Gene

Sources for LINC01994 Gene

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