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Aliases for LINC01973 Gene

Subcategory (RNA class) for LINC01973 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01973 Gene

  • Long Intergenic Non-Protein Coding RNA 1973 2 3
  • FLJ45079 Protein 5
  • FLJ45079 5

External Ids for LINC01973 Gene

Summaries for LINC01973 Gene

GeneCards Summary for LINC01973 Gene

LINC01973 (Long Intergenic Non-Protein Coding RNA 1973) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01973 Gene

Genomics for LINC01973 Gene

Regulatory Elements for LINC01973 Gene

Enhancers for LINC01973 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F077957 1.8 FANTOM5 Ensembl ENCODE 11.1 -75.9 -75883 5.7 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 RNU1-80P LINC01973 TMC8 TNRC6C TMC6 SOCS3 TMEM235 PGS1 GC17P077979
GH17F077645 2 Ensembl ENCODE 9.5 +238.2 238182 1.4 CTCF ZMYM3 SIN3A RAD21 ZIC2 FOSL1 ZNF316 GATA3 CTBP1 GLIS2 RNU1-80P LINC01973 GC17P077694 GC17P077573
GH17F077783 1.5 FANTOM5 ENCODE 11.3 +99.6 99557 2.0 HDGF PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 TNRC6C LINC01973 RNU1-80P TMC8 TMC6 ENSG00000278938 GC17P077792
GH17F077778 1.5 FANTOM5 Ensembl ENCODE 11.3 +104.5 104480 2.0 HDGF ATF1 ARNT SIN3A YBX1 ZNF121 GATA2 ZNF207 KDM4B PAF1 LINC01973 RNU1-80P TNRC6C TMEM235 ENSG00000278938 GC17P077792
GH17F077801 1.3 FANTOM5 Ensembl ENCODE 11.8 +81.1 81093 2.0 CTCF RFX1 ZNF266 REST MNT RAD21 SREBF1 ZFHX2 SMARCA4 POLR2A TNRC6C LINC01973 RNU1-80P TMEM235 GC17P077792 GC17P077836
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01973 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01973 Gene

Chromosome:
17
Start:
77,879,001 bp from pter
End:
77,884,087 bp from pter
Size:
5,087 bases
Orientation:
Minus strand

Genomic View for LINC01973 Gene

Genes around LINC01973 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01973 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01973 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01973 Gene

Proteins for LINC01973 Gene

Post-translational modifications for LINC01973 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01973 Gene

Domains & Families for LINC01973 Gene

Suggested Antigen Peptide Sequences for LINC01973 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LINC01973 Gene

Function for LINC01973 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01973 Gene

Localization for LINC01973 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01973 gene
Compartment Confidence
extracellular 3
peroxisome 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01973 Gene

Pathways & Interactions for LINC01973 Gene

SuperPathways for LINC01973 Gene

No Data Available

Interacting Proteins for LINC01973 Gene

Gene Ontology (GO) - Biological Process for LINC01973 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01973 Gene

Transcripts for LINC01973 Gene

mRNA/cDNA for LINC01973 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC01973 Gene

FLJ45079 protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01973 Gene

No ASD Table

Relevant External Links for LINC01973 Gene

GeneLoc Exon Structure for
LINC01973
ECgene alternative splicing isoforms for
LINC01973

Expression for LINC01973 Gene

SOURCE GeneReport for Unigene cluster for LINC01973 Gene:

Hs.514521
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01973 Gene

Orthologs for LINC01973 Gene

Evolution for LINC01973 Gene

ENSEMBL:
Gene Tree for LINC01973 (if available)
TreeFam:
Gene Tree for LINC01973 (if available)

No data available for Orthologs for LINC01973 Gene

Paralogs for LINC01973 Gene

No data available for Paralogs for LINC01973 Gene

Variants for LINC01973 Gene

Sequence variations from dbSNP and Humsavar for LINC01973 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111867124 -- 77,885,263(+) AGATA(A/G)ATGGG upstream-variant-2KB
rs111986303 -- 77,885,264(+) GATAG(A/G)TGGGT upstream-variant-2KB
rs112227252 -- 77,881,610(+) GACCC(A/C)GCGAA nc-transcript-variant
rs112544744 -- 77,885,629(+) AGGAA(A/G)GAAAG upstream-variant-2KB
rs112980118 -- 77,885,268(+) GATGG(A/G)TGGAT upstream-variant-2KB

Variation tolerance for LINC01973 Gene

Gene Damage Index Score: 2.25; 40.50% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01973 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01973

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01973 Gene

Disorders for LINC01973 Gene

Relevant External Links for LINC01973

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01973

No disorders were found for LINC01973 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01973 Gene

Publications for LINC01973 Gene

No publications were found for LINC01973 Gene.

Products for LINC01973 Gene

Sources for LINC01973 Gene

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