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Aliases for LINC01949 Gene

Subcategory (RNA class) for LINC01949 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01949 Gene

  • Long Intergenic Non-Protein Coding RNA 1949 2 3 5
  • CTC-242N15.1 3

External Ids for LINC01949 Gene

Summaries for LINC01949 Gene

GeneCards Summary for LINC01949 Gene

LINC01949 (Long Intergenic Non-Protein Coding RNA 1949) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01949 Gene

Genomics for LINC01949 Gene

Regulatory Elements for LINC01949 Gene

Enhancers for LINC01949 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G087073 1 Ensembl ENCODE 10.2 +165.4 165406 2.5 CBX5 EED SCRT2 ETV6 RELB IKZF2 CREM CHD2 SCRT1 MTA2 LINC01949 LOC105379065 GC05M087052
GH05G087194 0.9 Ensembl ENCODE 11 +44.5 44495 2.1 MTA2 JUN JUNB ATF2 TBX21 JUND CBX5 EGR1 IKZF1 RELB LINC01949 PIR58793 GC05M087119
GH05G087141 0.7 FANTOM5 dbSUPER 10.7 +98.7 98704 0.4 ZNF366 ZNF512 LINC01949 GC05M087119 PIR58793
GH05G087323 0.5 FANTOM5 10.5 -83.4 -83362 0.4 ZNF362 PBX2 MLLT1 SPI1 LINC01949 CCNH LOC644285 RNU6-606P GC05M087300
GH05G087103 0.5 dbSUPER 10.1 +136.2 136187 1.9 ARID3A POLR2A EMSY MAFK RELA LINC01949 RN7SKP34 MIR4280
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01949 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01949 Gene

Chromosome:
5
Start:
87,205,408 bp from pter
End:
87,240,145 bp from pter
Size:
34,738 bases
Orientation:
Minus strand

Genomic View for LINC01949 Gene

Genes around LINC01949 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01949 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01949 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01949 Gene

Proteins for LINC01949 Gene

Post-translational modifications for LINC01949 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01949 Gene

Domains & Families for LINC01949 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01949 Gene

Function for LINC01949 Gene

Phenotypes for LINC01949 Gene

GenomeRNAi human phenotypes for LINC01949:
genes like me logo Genes that share phenotypes with LINC01949: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01949 Gene

Localization for LINC01949 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01949 Gene

Pathways & Interactions for LINC01949 Gene

SuperPathways for LINC01949 Gene

No Data Available

Interacting Proteins for LINC01949 Gene

Gene Ontology (GO) - Biological Process for LINC01949 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01949 Gene

Drugs & Compounds for LINC01949 Gene

No Compound Related Data Available

Transcripts for LINC01949 Gene

mRNA/cDNA for LINC01949 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01949 Gene

No ASD Table

Relevant External Links for LINC01949 Gene

GeneLoc Exon Structure for
LINC01949
ECgene alternative splicing isoforms for
LINC01949

Expression for LINC01949 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01949 Gene

Orthologs for LINC01949 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01949 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 97 (a)
OneToOne
Species where no ortholog for LINC01949 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01949 Gene

ENSEMBL:
Gene Tree for LINC01949 (if available)
TreeFam:
Gene Tree for LINC01949 (if available)

Paralogs for LINC01949 Gene

No data available for Paralogs for LINC01949 Gene

Variants for LINC01949 Gene

Sequence variations from dbSNP and Humsavar for LINC01949 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000000586 -- 87,217,125(+) TTGTT(A/C)GTTTT intron-variant, nc-transcript-variant
rs1000008604 -- 87,219,567(+) GAGGA(-/CATTT)CATTT intron-variant
rs1000139258 -- 87,235,727(+) TCATT(G/T)TTTTA intron-variant
rs1000353156 -- 87,226,177(+) AATTA(C/G)GTAAA intron-variant
rs1000461735 -- 87,233,319(+) AGGGA(C/T)TCTCC intron-variant

Relevant External Links for LINC01949 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01949

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01949 Gene

Disorders for LINC01949 Gene

No disorders were found for LINC01949 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01949 Gene

Publications for LINC01949 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01949 Gene

Sources for LINC01949 Gene

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