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Aliases for LINC01940 Gene

Subcategory (RNA class) for LINC01940 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01940 Gene

  • Long Intergenic Non-Protein Coding RNA 1940 2 3
  • FLJ43879 Protein 5
  • FLJ43879 5

External Ids for LINC01940 Gene

Summaries for LINC01940 Gene

GeneCards Summary for LINC01940 Gene

LINC01940 (Long Intergenic Non-Protein Coding RNA 1940) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01940 Gene

Genomics for LINC01940 Gene

Regulatory Elements for LINC01940 Gene

Enhancers for LINC01940 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F238929 0.6 Ensembl ENCODE 0.8 -3.4 -3432 1.0 NR2F2 LINC01940 GC02M239007
GH02F238947 1.2 FANTOM5 Ensembl ENCODE 0.3 -22.4 -22419 2.6 BHLHE40 PLRG1 FOXK2 IKZF1 FOS NFE2L2 TCF7L2 SPI1 ILKAP LINC01940 GC02M239007
GH02F238937 0.8 Ensembl ENCODE 0.4 -12.6 -12622 2.4 BHLHE40 FOS FOXP2 NR2F2 LINC01940 GC02M239007
GH02F238911 0.6 ENCODE 0.4 +12.3 12253 4.1 CTCF JUND HDAC2 GLIS1 FOS MNT RAD21 TWIST2 LINC01940 GC02M238886
GH02F238973 0.9 Ensembl ENCODE 0.2 -48.3 -48275 2.1 CTCF CEBPB EP300 RAD21 JUND IKZF1 SMC3 STAT3 RCOR1 FOS GC02M239007 LINC01940
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01940 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01940 Gene

Chromosome:
2
Start:
238,919,302 bp from pter
End:
238,926,269 bp from pter
Size:
6,968 bases
Orientation:
Minus strand

Genomic View for LINC01940 Gene

Genes around LINC01940 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01940 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01940 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01940 Gene

Proteins for LINC01940 Gene

Post-translational modifications for LINC01940 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01940 Gene

Domains & Families for LINC01940 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01940 Gene

Function for LINC01940 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01940 Gene

Localization for LINC01940 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01940 Gene

Pathways & Interactions for LINC01940 Gene

SuperPathways for LINC01940 Gene

No Data Available

Interacting Proteins for LINC01940 Gene

Gene Ontology (GO) - Biological Process for LINC01940 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01940 Gene

Transcripts for LINC01940 Gene

mRNA/cDNA for LINC01940 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC01940 Gene

FLJ43879 protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01940 Gene

No ASD Table

Relevant External Links for LINC01940 Gene

GeneLoc Exon Structure for
LINC01940
ECgene alternative splicing isoforms for
LINC01940

Expression for LINC01940 Gene

SOURCE GeneReport for Unigene cluster for LINC01940 Gene:

Hs.516791
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01940 Gene

Orthologs for LINC01940 Gene

Evolution for LINC01940 Gene

ENSEMBL:
Gene Tree for LINC01940 (if available)
TreeFam:
Gene Tree for LINC01940 (if available)

No data available for Orthologs for LINC01940 Gene

Paralogs for LINC01940 Gene

No data available for Paralogs for LINC01940 Gene

Variants for LINC01940 Gene

Sequence variations from dbSNP and Humsavar for LINC01940 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10176434 -- 238,924,755(+) TCCCT(C/G)CTCCA intron-variant
rs10180008 -- 238,926,035(+) AGGAC(C/G)GGGCC nc-transcript-variant
rs11124234 -- 238,919,307(+) ACACC(A/G)TAGCA nc-transcript-variant
rs111341401 -- 238,920,590(+) AGAAG(C/T)AGAAA intron-variant
rs111387263 -- 238,921,546(+) TCGAA(C/T)TGTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01940 Gene

Variant ID Type Subtype PubMed ID
dgv4194n100 CNV gain 25217958

Relevant External Links for LINC01940 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01940

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01940 Gene

Disorders for LINC01940 Gene

Relevant External Links for LINC01940

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01940

No disorders were found for LINC01940 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01940 Gene

Publications for LINC01940 Gene

No publications were found for LINC01940 Gene.

Products for LINC01940 Gene

Sources for LINC01940 Gene

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