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Aliases for LINC01907 Gene

Subcategory (RNA class) for LINC01907 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01907 Gene

  • Long Intergenic Non-Protein Coding RNA 1907 2 3 5

External Ids for LINC01907 Gene

Summaries for LINC01907 Gene

GeneCards Summary for LINC01907 Gene

LINC01907 (Long Intergenic Non-Protein Coding RNA 1907) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01907 Gene

Genomics for LINC01907 Gene

Regulatory Elements for LINC01907 Gene

Enhancers for LINC01907 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G230773 1.4 Ensembl ENCODE dbSUPER 4.8 -76.2 -76219 6.8 SIN3A TCF12 ZNF121 FOS ZHX2 JUNB TBX21 ZNF592 SREBF1 MEF2D CAB39 RNU6-268P LINC01907 GC02P230779
GH02G230723 0.4 ENCODE 5.9 -23.0 -22977 0.6 ZNF121 LINC01907 BANF1P3 CAB39
GH02G230656 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +39.7 39684 8.4 HDGF PKNOX1 ARNT YBX1 ZNF766 ZNF143 ZNF207 ZNF263 JUNB REST CAB39 LOC101928816 RNU6-451P ZBTB8OSP2 LINC00471 SP110 SP140 GPR55 ARMC9 SP140L
GH02G230683 1.4 Ensembl ENCODE dbSUPER 0.4 +15.8 15767 2.5 PKNOX1 FOXA2 INSM2 FEZF1 THRB RFX5 TCF12 GLIS2 ZNF366 FOS LINC01907 GC02P230588
GH02G230666 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +32.3 32271 3.6 HDGF ATF1 WRNIP1 ZFP64 ZNF766 GLIS2 ELK1 NCOA1 JUNB REST CAB39 RNU6-451P RNU6-268P GPR55 SP100 SP110 SP140 LINC01907 GC02P230588
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01907 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01907 Gene

Chromosome:
2
Start:
230,690,921 bp from pter
End:
230,700,529 bp from pter
Size:
9,609 bases
Orientation:
Minus strand

Genomic View for LINC01907 Gene

Genes around LINC01907 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01907 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01907 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01907 Gene

Proteins for LINC01907 Gene

Post-translational modifications for LINC01907 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01907 Gene

Domains & Families for LINC01907 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01907 Gene

Function for LINC01907 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01907 Gene

Localization for LINC01907 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01907 Gene

Pathways & Interactions for LINC01907 Gene

SuperPathways for LINC01907 Gene

No Data Available

Interacting Proteins for LINC01907 Gene

Gene Ontology (GO) - Biological Process for LINC01907 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01907 Gene

Drugs & Compounds for LINC01907 Gene

No Compound Related Data Available

Transcripts for LINC01907 Gene

mRNA/cDNA for LINC01907 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01907 Gene

No ASD Table

Relevant External Links for LINC01907 Gene

GeneLoc Exon Structure for
LINC01907
ECgene alternative splicing isoforms for
LINC01907

Expression for LINC01907 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01907 Gene

Orthologs for LINC01907 Gene

Evolution for LINC01907 Gene

ENSEMBL:
Gene Tree for LINC01907 (if available)
TreeFam:
Gene Tree for LINC01907 (if available)

No data available for Orthologs for LINC01907 Gene

Paralogs for LINC01907 Gene

No data available for Paralogs for LINC01907 Gene

Variants for LINC01907 Gene

Sequence variations from dbSNP and Humsavar for LINC01907 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000205109 -- 230,700,925(+) CGTTC(C/T)GATTA upstream-variant-2KB
rs1000558357 -- 230,695,833(+) CAGGA(A/G)AACAG intron-variant
rs1000626229 -- 230,694,666(+) CTGCC(C/G)TTATG nc-transcript-variant
rs1000639828 -- 230,702,491(+) ATCCA(C/G)CCACC upstream-variant-2KB
rs1000836546 -- 230,695,608(+) TAAGA(G/T)TCTAT intron-variant

Relevant External Links for LINC01907 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01907

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01907 Gene

Disorders for LINC01907 Gene

No disorders were found for LINC01907 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01907 Gene

Publications for LINC01907 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC01907 Gene

Sources for LINC01907 Gene

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