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Aliases for LINC01869 Gene

Subcategory (RNA class) for LINC01869 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01869 Gene

  • Long Intergenic Non-Protein Coding RNA 1869 2 3
  • Uncharacterized LOC284365 5
  • CTD-2568A17.5 3
  • MGC45922 5

External Ids for LINC01869 Gene

Summaries for LINC01869 Gene

GeneCards Summary for LINC01869 Gene

LINC01869 (Long Intergenic Non-Protein Coding RNA 1869) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01869 Gene

Genomics for LINC01869 Gene

Regulatory Elements for LINC01869 Gene

Enhancers for LINC01869 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F050802 0.6 ENCODE 19.5 -4.6 -4591 4.2 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 LINC01869 ZNF175 POLD1 AKT1S1 NUP62 CTU1 PNKP C19orf48 ACPT KLK1
GH19F050835 0.9 FANTOM5 Ensembl ENCODE 11.8 +27.4 27373 1.7 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 YY1 ZNF766 ZNF143 ENSG00000268375 GPR32 SIGLEC21P LOC100133225 ENSG00000269021 ENSG00000268595 LINC01872 ENSG00000268889 NUP62 PTOV1-AS2
GH19F050890 0.5 ENCODE 11.5 +82.3 82279 1.0 HDGF PKNOX1 ATF1 ARNT CREB3L1 ARID4B SIN3A YY1 GLIS2 ZNF143 KLK4 ZNF577 NUP62 LINC01869 C19orf48 SNORD88C KLK15 KLK1 SPACA6P-AS KLKP1
GH19F050896 0.5 Ensembl ENCODE 11.5 +88.2 88227 1.8 HDGF PKNOX1 ATF1 GLIS2 ZNF143 FOS SP3 JUNB NCOA1 TSHZ1 NUP62 ZNF175 KLK2 LINC01869 KLK15 KLK1 ZNF577 KLK11 POLD1 CTU1
GH19F050931 0.5 ENCODE 11 +124.0 123950 2.9 CTCF MAFG BACH1 RAD21 ARID1B ZNF316 ZNF366 NFE2L1 ZBTB33 NFE2 KLK4 KLK6 KLK2 KLK15 KLK1 LINC01869 C19orf48 SNORD88C KLK14 CTU1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC01869 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01869 Gene

Chromosome:
19
Start:
50,808,874 bp from pter
End:
50,818,880 bp from pter
Size:
10,007 bases
Orientation:
Plus strand

Genomic View for LINC01869 Gene

Genes around LINC01869 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01869 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01869 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01869 Gene

Proteins for LINC01869 Gene

Post-translational modifications for LINC01869 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01869 Gene

Domains & Families for LINC01869 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01869 Gene

Function for LINC01869 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01869 Gene

Localization for LINC01869 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01869 Gene

Pathways & Interactions for LINC01869 Gene

SuperPathways for LINC01869 Gene

No Data Available

Interacting Proteins for LINC01869 Gene

Gene Ontology (GO) - Biological Process for LINC01869 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01869 Gene

Transcripts for LINC01869 Gene

mRNA/cDNA for LINC01869 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC01869 Gene

Uncharacterized LOC284365:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01869 Gene

No ASD Table

Relevant External Links for LINC01869 Gene

GeneLoc Exon Structure for
LINC01869
ECgene alternative splicing isoforms for
LINC01869

Expression for LINC01869 Gene

SOURCE GeneReport for Unigene cluster for LINC01869 Gene:

Hs.161397
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01869 Gene

Orthologs for LINC01869 Gene

Evolution for LINC01869 Gene

ENSEMBL:
Gene Tree for LINC01869 (if available)
TreeFam:
Gene Tree for LINC01869 (if available)

No data available for Orthologs for LINC01869 Gene

Paralogs for LINC01869 Gene

No data available for Paralogs for LINC01869 Gene

Variants for LINC01869 Gene

Sequence variations from dbSNP and Humsavar for LINC01869 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10414120 -- 50,816,083(+) TTGCT(C/G)TTCTG upstream-variant-2KB
rs10415472 -- 50,816,012(+) ctcta(C/T)gaaca upstream-variant-2KB
rs111449138 -- 50,817,880(+) AGCCT(-/TCTG)TCTGT intron-variant
rs111457055 -- 50,816,267(+) ACCTC(A/T)CTTCT upstream-variant-2KB
rs112818519 -- 50,816,828(+) AGCAG(C/G)TGCGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC01869 Gene

Variant ID Type Subtype PubMed ID
dgv203n21 CNV loss 19592680
dgv204n21 CNV loss 19592680
esv3583463 CNV loss 25503493
esv3583464 CNV loss 25503493
nsv1140251 OTHER inversion 24896259
nsv516450 CNV loss 19592680

Relevant External Links for LINC01869 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01869

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01869 Gene

Disorders for LINC01869 Gene

Relevant External Links for LINC01869

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01869

No disorders were found for LINC01869 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01869 Gene

Publications for LINC01869 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment. (PMID: 15782160) Kim J. … Iyer V.R. (Nat. Methods 2005) 3 64

Products for LINC01869 Gene

Sources for LINC01869 Gene

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