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Aliases for LINC01844 Gene

Subcategory (RNA class) for LINC01844 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01844 Gene

  • Long Intergenic Non-Protein Coding RNA 1844 2 3 5

External Ids for LINC01844 Gene

Summaries for LINC01844 Gene

GeneCards Summary for LINC01844 Gene

LINC01844 (Long Intergenic Non-Protein Coding RNA 1844) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01844 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01844 Gene

Genomics for LINC01844 Gene

Regulatory Elements for LINC01844 Gene

Enhancers for LINC01844 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H142420 1.4 Ensembl ENCODE dbSUPER 24.3 -324.4 -324362 1.4 HDAC1 FOXA2 ATF1 NFIB ARID4B ZBTB40 RAD21 RARA GATA2 RCOR1 LINC01844 SPRY4 SPRY4-AS1 GC05P142406 GC05P142495
GH05H142403 1 Ensembl ENCODE 29.3 -340.4 -340423 3.9 LEF1 ESRRA SIN3A EBF1 MTA3 CTBP1 GATA3 ZNF366 SCRT2 NFE2 LINC01844 GNPDA1 PCDHGC3 GC05P142406 GC05P142397
GH05H142388 1.5 FANTOM5 Ensembl ENCODE 18.6 -355.1 -355062 3.9 HDAC1 KLF17 FEZF1 ZNF366 SCRT2 ZNF680 CAVIN1 CEBPB ZNF623 ZNF592 LINC01844 FCHSD1 LOC102723915 HDAC3 GC05M142394 GC05P142356
GH05H142443 1.5 FANTOM5 Ensembl ENCODE 15.5 -299.7 -299729 3.9 PKNOX1 FOXA2 ATF1 TBL1XR1 ARNT NFRKB RARA ZNF766 ELK1 EGR1 LINC01844 PCDH1 SPRY4 GC05P142406 GC05P142495
GH05H142397 0.8 Ensembl ENCODE 29 -346.4 -346379 2.9 FOSL1 PKNOX1 ATF1 NR2C2 TEAD3 LINC01844 SPRY4 SPRY4-AS1 GNPDA1 PCDHGC3 GC05P142397 GC05P142406
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01844 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01844 Gene

Genomic Locations for LINC01844 Gene
chr5:142,745,600-142,760,998
(GRCh38/hg38)
Size:
15,399 bases
Orientation:
Plus strand
chr5:142,125,165-142,140,563
(GRCh37/hg19)

Genomic View for LINC01844 Gene

Genes around LINC01844 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01844 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01844 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01844 Gene

Proteins for LINC01844 Gene

Post-translational modifications for LINC01844 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01844 Gene

Domains & Families for LINC01844 Gene

Gene Families for LINC01844 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01844: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01844 Gene

Function for LINC01844 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01844 Gene

Localization for LINC01844 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01844 Gene

Pathways & Interactions for LINC01844 Gene

SuperPathways for LINC01844 Gene

No Data Available

Interacting Proteins for LINC01844 Gene

Gene Ontology (GO) - Biological Process for LINC01844 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01844 Gene

Drugs & Compounds for LINC01844 Gene

No Compound Related Data Available

Transcripts for LINC01844 Gene

mRNA/cDNA for LINC01844 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01844 Gene

No ASD Table

Relevant External Links for LINC01844 Gene

GeneLoc Exon Structure for
LINC01844
ECgene alternative splicing isoforms for
LINC01844

Expression for LINC01844 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01844 Gene

Orthologs for LINC01844 Gene

Evolution for LINC01844 Gene

ENSEMBL:
Gene Tree for LINC01844 (if available)
TreeFam:
Gene Tree for LINC01844 (if available)

No data available for Orthologs for LINC01844 Gene

Paralogs for LINC01844 Gene

No data available for Paralogs for LINC01844 Gene

Variants for LINC01844 Gene

Sequence variations from dbSNP and Humsavar for LINC01844 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000256164 -- 142,748,278(+) CTATT(A/G)AGAAA intron-variant
rs1000356023 -- 142,746,541(+) TTCAA(C/T)TGTTT intron-variant
rs1000388793 -- 142,745,361(+) TAGAG(G/T)GAGGG upstream-variant-2KB
rs1000403897 -- 142,758,856(+) CACTC(A/G)TTTAT intron-variant
rs1000481725 -- 142,755,288(+) AATTT(C/T)TGTAT intron-variant

Relevant External Links for LINC01844 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01844

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01844 Gene

Disorders for LINC01844 Gene

Relevant External Links for LINC01844

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01844

No disorders were found for LINC01844 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01844 Gene

Publications for LINC01844 Gene

  1. Downregulated Expression of Long Non-Coding RNA LOC101926975 Impairs both Cell Proliferation and Cell Cycle and Its Clinical Implication in Hirschsprung Disease Patients. (PMID: 27076786) Shen Z … Tang W (International journal of medical sciences 2016) 2 3 60

Products for LINC01844 Gene

Sources for LINC01844 Gene

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