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Aliases for LINC01842 Gene

Subcategory (RNA class) for LINC01842 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01842 Gene

  • Long Intergenic Non-Protein Coding RNA 1842 2 3 5
  • CTC-548K16.1 3

External Ids for LINC01842 Gene

Summaries for LINC01842 Gene

GeneCards Summary for LINC01842 Gene

LINC01842 (Long Intergenic Non-Protein Coding RNA 1842) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01842 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01842 Gene

Genomics for LINC01842 Gene

Regulatory Elements for LINC01842 Gene

Enhancers for LINC01842 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H014354 1.6 FANTOM5 Ensembl ENCODE dbSUPER 6.8 +22.3 22308 2 BCOR HDAC1 HDGF LEF1 KLF1 TAL1 ETV1 ZMYM3 CEBPG IRF9 ADGRE2 ADGRE5 SNRPGP15 DNAJB1 LINC01842 ZNF333 PKN1 DCAF15 RFX1 DDX39A
GH19H014348 1.4 Ensembl ENCODE dbSUPER 7.5 +14.9 14917 0 PKNOX1 RB1 ARID4B KLF17 RAD21 ZNF121 GLIS2 EGR1 ZNF143 IKZF2 MIR181C DDX39A LINC01842 LINC01841
GH19H014333 0.9 ENCODE dbSUPER 8.5 +0.1 105 1 STAT1 MAZ SP3 KLF1 ZNF362 SP2 ZNF384 E2F4 ZBTB40 GLIS2 LINC01842 LINC01841
GH19H014309 0.8 ENCODE 8.2 -23.8 -23768 1 HDGF BMI1 EBF1 RELA EED ATF7 RUNX3 IKZF2 RNF2 CBFB LINC01842 PIR46875
GH19H014432 1.3 FANTOM5 ENCODE 4.6 +100.6 100582 3 HDGF PKNOX1 ARID4B GLIS2 ZNF143 FOS SP3 SP5 KAT8 SMARCA4 AKAP8 MRI1 CCDC130 ZNF333 PKN1 LINC01842 NDUFB7 ENSG00000267474
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01842 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01842 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000107521 -42 600 STAT1 MAZ KLF1 ZNF362 SP2 ZNF384 E2F4 ZBTB40 GLIS2 ZNF610

Genomic Location for LINC01842 Gene

Chromosome:
19
Start:
14,333,742 bp from pter
End:
14,343,916 bp from pter
Size:
10,175 bases
Orientation:
Plus strand

Genomic View for LINC01842 Gene

Genes around LINC01842 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01842 Gene

Proteins for LINC01842 Gene

Post-translational modifications for LINC01842 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01842 Gene

Domains & Families for LINC01842 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01842 Gene

Function for LINC01842 Gene

Phenotypes From GWAS Catalog for LINC01842 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01842 Gene

Localization for LINC01842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01842 Gene

Pathways & Interactions for LINC01842 Gene

SuperPathways for LINC01842 Gene

No Data Available

Interacting Proteins for LINC01842 Gene

Gene Ontology (GO) - Biological Process for LINC01842 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01842 Gene

Drugs & Compounds for LINC01842 Gene

No Compound Related Data Available

Transcripts for LINC01842 Gene

mRNA/cDNA for LINC01842 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01842 Gene

No ASD Table

Relevant External Links for LINC01842 Gene

GeneLoc Exon Structure for
LINC01842
ECgene alternative splicing isoforms for
LINC01842

Expression for LINC01842 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01842 Gene

Orthologs for LINC01842 Gene

Evolution for LINC01842 Gene

ENSEMBL:
Gene Tree for LINC01842 (if available)
TreeFam:
Gene Tree for LINC01842 (if available)

No data available for Orthologs for LINC01842 Gene

Paralogs for LINC01842 Gene

No data available for Paralogs for LINC01842 Gene

Variants for LINC01842 Gene

Sequence variations from dbSNP and Humsavar for LINC01842 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000216933 -- 14,338,694(+) TACCT(C/G)AGTTA intron-variant
rs1000295103 -- 14,332,981(+) ATCCC(A/G)GTGCT intron-variant, upstream-variant-2KB
rs1000546726 -- 14,342,952(+) AGCCT(C/T)GGTAG intron-variant
rs1000568965 -- 14,339,147(+) CCCTC(A/C)CCACT intron-variant
rs1000601229 -- 14,336,787(+) ATGAC(C/T)GTGCT intron-variant

Relevant External Links for LINC01842 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01842

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01842 Gene

Disorders for LINC01842 Gene

Relevant External Links for LINC01842

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01842

No disorders were found for LINC01842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01842 Gene

Publications for LINC01842 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC01842 Gene

Sources for LINC01842 Gene

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