Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01806 Gene

Subcategory (RNA class) for LINC01806 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01806 Gene

  • Long Intergenic Non-Protein Coding RNA 1806 2 3 5

External Ids for LINC01806 Gene

Summaries for LINC01806 Gene

GeneCards Summary for LINC01806 Gene

LINC01806 (Long Intergenic Non-Protein Coding RNA 1806) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01806 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01806 Gene

Genomics for LINC01806 Gene

Regulatory Elements for LINC01806 Gene

Enhancers for LINC01806 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H161242 1.8 ENCODE 47 -0.3 -258 3 TBP SAP130 BRCA1 KMT2B ZBTB40 TEAD3 SLC30A9 LCORL POLR2A ZNF366 LINC01806 GC02M161238
GH02H161133 1.5 FANTOM5 ENCODE dbSUPER 33.2 -107.6 -107622 6 HDGF PKNOX1 FOXA2 NFIB FEZF1 BATF DNMT3B ZSCAN9 ZNF207 ATF7 LINC01806 TANK LOC105373719
GH02H161158 1.4 ENCODE dbSUPER 29.3 -84.1 -84115 3 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 LINC01806 AHCTF1P1 LOC105373719 GC02M160996
GH02H161307 1.1 ENCODE 32 +64.0 64027 2 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 LINC01806 TANK LOC101929512 GC02M161340
GH02H161237 3 VISTA FANTOM5 Ensembl ENCODE 11.2 -6.2 -6199 2 RB1 ZSCAN4 SIN3A NFXL1 GLIS2 ZNF366 SCRT2 EGR2 ZNF202 SMARCA5 TBR1 LINC01806 AHCTF1P1 SLC4A10 GC02M161238 GC02M161236
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01806 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01806 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000125419 261 1201 TBP BRCA1 KMT2B ZBTB40 TEAD3 SLC30A9 LCORL POLR2A ZNF366 EED

Genomic Location for LINC01806 Gene

Chromosome:
2
Start:
161,244,739 bp from pter
End:
161,249,050 bp from pter
Size:
4,312 bases
Orientation:
Plus strand

Genomic View for LINC01806 Gene

Genes around LINC01806 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01806 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01806 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01806 Gene

Proteins for LINC01806 Gene

Post-translational modifications for LINC01806 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01806 Gene

Domains & Families for LINC01806 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01806 Gene

Function for LINC01806 Gene

Phenotypes From GWAS Catalog for LINC01806 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01806 Gene

Localization for LINC01806 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01806 Gene

Pathways & Interactions for LINC01806 Gene

SuperPathways for LINC01806 Gene

No Data Available

Interacting Proteins for LINC01806 Gene

Gene Ontology (GO) - Biological Process for LINC01806 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01806 Gene

Drugs & Compounds for LINC01806 Gene

No Compound Related Data Available

Transcripts for LINC01806 Gene

mRNA/cDNA for LINC01806 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01806 Gene

No ASD Table

Relevant External Links for LINC01806 Gene

GeneLoc Exon Structure for
LINC01806
ECgene alternative splicing isoforms for
LINC01806

Expression for LINC01806 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01806 Gene

Orthologs for LINC01806 Gene

Evolution for LINC01806 Gene

ENSEMBL:
Gene Tree for LINC01806 (if available)
TreeFam:
Gene Tree for LINC01806 (if available)

No data available for Orthologs for LINC01806 Gene

Paralogs for LINC01806 Gene

No data available for Paralogs for LINC01806 Gene

Variants for LINC01806 Gene

Sequence variations from dbSNP and Humsavar for LINC01806 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000867802 -- 161,248,480(+) GTAGC(C/T)AACAA intron-variant, nc-transcript-variant
rs1000897152 -- 161,248,869(+) ATAAG(A/C)TATAA intron-variant, nc-transcript-variant
rs1001044174 -- 161,248,987(+) TATCT(G/T)TAAAT intron-variant, nc-transcript-variant
rs1001073670 -- 161,248,646(+) ATCTG(C/T)TACAT intron-variant, nc-transcript-variant
rs1001204860 -- 161,246,977(+) TCTGG(A/G)TGTCA intron-variant, nc-transcript-variant

Relevant External Links for LINC01806 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01806

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01806 Gene

Disorders for LINC01806 Gene

Relevant External Links for LINC01806

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01806

No disorders were found for LINC01806 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01806 Gene

Publications for LINC01806 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LINC01806 Gene

Sources for LINC01806 Gene

Content
Loading form....