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Aliases for LINC01806 Gene

Subcategory (RNA class) for LINC01806 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01806 Gene

  • Long Intergenic Non-Protein Coding RNA 1806 2 3
  • AC009299.3 5

External Ids for LINC01806 Gene

Summaries for LINC01806 Gene

GeneCards Summary for LINC01806 Gene

LINC01806 (Long Intergenic Non-Protein Coding RNA 1806) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01806 Gene

Genomics for LINC01806 Gene

Regulatory Elements for LINC01806 Gene

Enhancers for LINC01806 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F161242 1.9 ENCODE 47 -0.3 -258 3.2 TBP PKNOX1 ZNF48 BRCA1 ZBTB40 RARA SLC30A9 ZNF366 SMAD5 TBX21 LINC01806 GC02M161238
GH02F161162 1.4 Ensembl ENCODE 37.5 -76.3 -76288 11.0 HDGF PKNOX1 ARNT MLX WRNIP1 SIN3A ARID4B FEZF1 DMAP1 YY1 LINC01806 AHCTF1P1 GC02M160996 GC02M161236
GH02F161133 1.3 FANTOM5 ENCODE 33.2 -107.6 -107622 6.5 HDGF PKNOX1 ATF1 WRNIP1 FEZF1 SLC30A9 ZNF207 FOS SP5 JUNB LINC01806 TANK LOC105373719
GH02F161307 1.1 ENCODE 32 +64.0 64027 2.9 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 LINC01806 TANK LOC101929512 GC02M161340
GH02F161158 1.2 ENCODE 29.3 -84.1 -84115 3.4 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 LINC01806 AHCTF1P1 LOC105373719 GC02M160996
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01806 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01806 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001828888 261 1601 TBP ZNF48 BRCA1 ZBTB40 RARA SLC30A9 ZNF366 SMAD5 TBX21 KAT8

Genomic Location for LINC01806 Gene

Chromosome:
2
Start:
161,244,739 bp from pter
End:
161,249,050 bp from pter
Size:
4,312 bases
Orientation:
Plus strand

Genomic View for LINC01806 Gene

Genes around LINC01806 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01806 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01806 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01806 Gene

Proteins for LINC01806 Gene

Post-translational modifications for LINC01806 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01806 Gene

Domains & Families for LINC01806 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01806 Gene

Function for LINC01806 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01806 Gene

Localization for LINC01806 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01806 Gene

Pathways & Interactions for LINC01806 Gene

SuperPathways for LINC01806 Gene

No Data Available

Interacting Proteins for LINC01806 Gene

Gene Ontology (GO) - Biological Process for LINC01806 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01806 Gene

Transcripts for LINC01806 Gene

mRNA/cDNA for LINC01806 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC01806 Gene

Uncharacterized LOC100996579:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01806 Gene

No ASD Table

Relevant External Links for LINC01806 Gene

GeneLoc Exon Structure for
LINC01806
ECgene alternative splicing isoforms for
LINC01806

Expression for LINC01806 Gene

SOURCE GeneReport for Unigene cluster for LINC01806 Gene:

Hs.660929
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01806 Gene

Orthologs for LINC01806 Gene

Evolution for LINC01806 Gene

ENSEMBL:
Gene Tree for LINC01806 (if available)
TreeFam:
Gene Tree for LINC01806 (if available)

No data available for Orthologs for LINC01806 Gene

Paralogs for LINC01806 Gene

No data available for Paralogs for LINC01806 Gene

Variants for LINC01806 Gene

Sequence variations from dbSNP and Humsavar for LINC01806 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10168014 -- 161,249,226(+) TACCC(A/G)GATAA intron-variant
rs111815479 -- 161,245,118(+) AGGCC(A/G)GGAAA intron-variant
rs112323328 -- 161,248,574(+) AGAAG(C/G)CTGGT nc-transcript-variant
rs112661123 -- 161,244,614(+) GTACG(-/C)CCCCC intron-variant, upstream-variant-2KB
rs1146030 -- 161,248,273(+) AGTAA(C/G)ATATT intron-variant, nc-transcript-variant

Relevant External Links for LINC01806 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01806

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01806 Gene

Disorders for LINC01806 Gene

No disorders were found for LINC01806 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01806 Gene

Publications for LINC01806 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC01806 Gene

Sources for LINC01806 Gene

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