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Aliases for LINC01786 Gene

Subcategory (RNA class) for LINC01786 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01786 Gene

  • Long Intergenic Non-Protein Coding RNA 1786 2 3 5

External Ids for LINC01786 Gene

Summaries for LINC01786 Gene

GeneCards Summary for LINC01786 Gene

LINC01786 (Long Intergenic Non-Protein Coding RNA 1786) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01786 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01786 Gene

Genomics for LINC01786 Gene

Regulatory Elements for LINC01786 Gene

Enhancers for LINC01786 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H001156 1.8 FANTOM5 Ensembl ENCODE dbSUPER 23.6 -115.6 -115568 4.4 HDGF ATF1 SIN3A ARID4B ZNF766 ATF7 SP5 ZHX2 ZNF592 MEF2D ATAD3B INTS11 LOC105378580 LINC01786 SLC35E2 LINC00115 TTLL10 ENSG00000240731 LOC100129381 TTLL10-AS1
GH01H000998 1.4 ENCODE dbSUPER 21 -273.4 -273363 3.5 MLX FEZF1 DMAP1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A MEF2D SSRP1 INTS11 WASH7P ATAD3B ENSG00000240731 ENSG00000230092 CCNL2 CDK11A SLC35E2 LOC100288379 LOC100129381
GH01H001373 1.2 ENCODE 21.8 +101.1 101122 3.9 MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 NFYC ENSG00000230092 CDK11A ATAD3B LOC100288379 CCNL2 INTS11 ENSG00000237094 SDF4 ENSG00000240731 LOC100288069
GH01H002226 1.8 FANTOM5 ENCODE dbSUPER 11.8 +957.3 957343 9.9 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 SLC35E2 ENSG00000272455 LOC100129381 ENSG00000234396 MORN1 SKI FAAP20 ATAD3B INTS11 LOC100129534
GH01H002253 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +982.4 982390 6.4 PKNOX1 ATF1 ARNT BRCA1 ZNF2 ETS1 TCF12 GLIS2 CBX5 FOS ATAD3B CCNL2 ENSG00000240731 INTS11 CDK11A UBE2J2 RER1 CDK11B SLC35E2 LOC100288379
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01786 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01786 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000000166 -402 1601 PKNOX1 ARID4B SIN3A ZNF2 ZBTB7B YY1 SLC30A9 ZNF207 ZNF143 SP3

Genomic Locations for LINC01786 Gene

Genomic Locations for LINC01786 Gene
chr1:1,274,002-1,280,420
(GRCh38/hg38)
Size:
6,419 bases
Orientation:
Plus strand
chr1:1,210,603-1,215,800
(GRCh37/hg19)

Genomic View for LINC01786 Gene

Genes around LINC01786 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01786 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01786 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01786 Gene

Proteins for LINC01786 Gene

Post-translational modifications for LINC01786 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01786 Gene

Domains & Families for LINC01786 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01786 Gene

Function for LINC01786 Gene

Phenotypes From GWAS Catalog for LINC01786 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01786 Gene

Localization for LINC01786 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01786 Gene

Pathways & Interactions for LINC01786 Gene

SuperPathways for LINC01786 Gene

No Data Available

Interacting Proteins for LINC01786 Gene

Gene Ontology (GO) - Biological Process for LINC01786 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01786 Gene

Drugs & Compounds for LINC01786 Gene

No Compound Related Data Available

Transcripts for LINC01786 Gene

mRNA/cDNA for LINC01786 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01786 Gene

No ASD Table

Relevant External Links for LINC01786 Gene

GeneLoc Exon Structure for
LINC01786
ECgene alternative splicing isoforms for
LINC01786

Expression for LINC01786 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01786 Gene

Orthologs for LINC01786 Gene

Evolution for LINC01786 Gene

ENSEMBL:
Gene Tree for LINC01786 (if available)
TreeFam:
Gene Tree for LINC01786 (if available)

No data available for Orthologs for LINC01786 Gene

Paralogs for LINC01786 Gene

No data available for Paralogs for LINC01786 Gene

Variants for LINC01786 Gene

Sequence variations from dbSNP and Humsavar for LINC01786 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000137475 -- 1,273,502(+) ACCTC(C/G)GGTTC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000472349 -- 1,272,616(+) CTGCC(G/T)GGGTC intron-variant, upstream-variant-2KB
rs1000524309 -- 1,272,324(+) TCACA(C/T)ACAGA intron-variant, upstream-variant-2KB
rs1000693504 -- 1,277,709(+) GCCTG(G/T)AGTCC intron-variant
rs1000823673 -- 1,276,931(+) CAAGA(G/T)TCTTT intron-variant

Relevant External Links for LINC01786 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01786

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01786 Gene

Disorders for LINC01786 Gene

No disorders were found for LINC01786 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01786 Gene

Publications for LINC01786 Gene

No publications were found for LINC01786 Gene.

Products for LINC01786 Gene

Sources for LINC01786 Gene

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