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Aliases for LINC01770 Gene

Subcategory (RNA class) for LINC01770 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01770 Gene

  • Long Intergenic Non-Protein Coding RNA 1770 2 3 5

External Ids for LINC01770 Gene

Summaries for LINC01770 Gene

GeneCards Summary for LINC01770 Gene

LINC01770 (Long Intergenic Non-Protein Coding RNA 1770) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01770 Gene

Genomics for LINC01770 Gene

Regulatory Elements for LINC01770 Gene

Enhancers for LINC01770 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G001121 1.6 Ensembl ENCODE dbSUPER 20.8 +312.0 311962 2.6 HDGF FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF2 SLC30A9 ZNF143 ZNF263 LINC01770 LINC00115 LOC100287934 CICP3 LINC01786 ENSG00000240731 ENSG00000272455 SLC35E2 MIB2 CCNL2
GH01G001235 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.7 +195.0 195013 7.9 HDGF PKNOX1 FOXA2 MLX CREB3L1 AGO1 ARID4B SIN3A DMAP1 FOS B3GALT6 ENSG00000230092 LOC100288379 CCNL2 TMEM240 ENSG00000237094 LINC01770 ANKRD65 ENSG00000272106 LOC100288069
GH01G001428 1.8 FANTOM5 ENCODE dbSUPER 13.4 +2.3 2270 8.2 HDGF FOXA2 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ATAD3C LINC01770 ANKRD65 ATAD3B VWA1 LOC100129381 RNF223 TMEM88B DVL1 NADK
GH01G001023 1.6 Ensembl ENCODE dbSUPER 12.7 +409.8 409806 2.7 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ENSG00000272512 LINC01770 AGRN PIR57007
GH01G001204 1.9 FANTOM5 Ensembl ENCODE dbSUPER 9.9 +227.3 227307 4.8 HDGF ARNT ZNF133 GLIS2 FOS YY2 JUNB REST TSHZ1 ZNF623 CCNL2 ENSG00000240731 LOC100288379 SLC35E2 ANKRD65 ENSG00000230092 LOC100129381 LINC01770 FAM87B B3GALT6
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01770 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01770 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000000192 -1327 1001 HDGF ATF1 AGO1 ARID4B SIN3A ZNF48 GLIS2 KLF13 KDM4B SP3

Genomic Location for LINC01770 Gene

Chromosome:
1
Start:
1,430,157 bp from pter
End:
1,434,573 bp from pter
Size:
4,417 bases
Orientation:
Minus strand

Genomic View for LINC01770 Gene

Genes around LINC01770 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01770 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01770 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01770 Gene

Proteins for LINC01770 Gene

Post-translational modifications for LINC01770 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01770 Gene

Domains & Families for LINC01770 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01770 Gene

Function for LINC01770 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01770 Gene

Localization for LINC01770 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01770 Gene

Pathways & Interactions for LINC01770 Gene

SuperPathways for LINC01770 Gene

No Data Available

Interacting Proteins for LINC01770 Gene

Gene Ontology (GO) - Biological Process for LINC01770 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01770 Gene

Drugs & Compounds for LINC01770 Gene

No Compound Related Data Available

Transcripts for LINC01770 Gene

mRNA/cDNA for LINC01770 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01770 Gene

No ASD Table

Relevant External Links for LINC01770 Gene

GeneLoc Exon Structure for
LINC01770
ECgene alternative splicing isoforms for
LINC01770

Expression for LINC01770 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01770 Gene

Orthologs for LINC01770 Gene

Evolution for LINC01770 Gene

ENSEMBL:
Gene Tree for LINC01770 (if available)
TreeFam:
Gene Tree for LINC01770 (if available)

No data available for Orthologs for LINC01770 Gene

Paralogs for LINC01770 Gene

No data available for Paralogs for LINC01770 Gene

Variants for LINC01770 Gene

Sequence variations from dbSNP and Humsavar for LINC01770 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000373339 -- 1,430,748(+) GCGGC(C/T)GTTTC intron-variant, nc-transcript-variant
rs1000600492 -- 1,433,594(+) CTGAC(C/G)CGTCC intron-variant, upstream-variant-2KB
rs1000708901 -- 1,429,700(+) CCCTC(A/G)GCCCC downstream-variant-500B
rs1000784823 -- 1,431,280(+) TGAGG(A/G)GGAGG intron-variant, upstream-variant-2KB
rs1000862244 -- 1,432,274(+) AGGGG(C/T)CCTGC intron-variant, upstream-variant-2KB

Relevant External Links for LINC01770 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01770

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01770 Gene

Disorders for LINC01770 Gene

No disorders were found for LINC01770 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01770 Gene

Publications for LINC01770 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for LINC01770 Gene

Sources for LINC01770 Gene

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