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Aliases for LINC01770 Gene

Subcategory (RNA class) for LINC01770 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01770 Gene

  • Long Intergenic Non-Protein Coding RNA 1770 2 3 5

External Ids for LINC01770 Gene

Summaries for LINC01770 Gene

GeneCards Summary for LINC01770 Gene

LINC01770 (Long Intergenic Non-Protein Coding RNA 1770) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01770 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01770 Gene

Genomics for LINC01770 Gene

Regulatory Elements for LINC01770 Gene

Enhancers for LINC01770 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H001121 1.5 Ensembl ENCODE dbSUPER 21 +312.0 311962 2.6 HDGF FOXA2 ZFP64 ZNF2 GLIS2 ZNF143 ATF7 REST PPARG ZNF592 LOC105378580 LINC01770 UBE2J2 VWA1 INTS11 LINC00115 LOC101928626 SLC35E2 ATAD3B ENSG00000240731
GH01H001204 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +227.3 227307 4.8 HDGF ARNT ZNF133 GLIS2 FOS RUNX3 YY2 REST TSHZ1 ZNF623 CCNL2 ENSG00000240731 LOC100288379 MXRA8 SLC35E2 ANKRD65 ENSG00000230092 VWA1 LOC100129381 LINC01770
GH01H002253 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.2 -821.8 -821819 6.4 PKNOX1 ATF1 ARNT BRCA1 ZNF2 ETS1 TCF12 GLIS2 CBX5 FOS ATAD3B CCNL2 ENSG00000240731 INTS11 CDK11A UBE2J2 RER1 CDK11B SLC35E2 LOC100288379
GH01H001303 1.4 ENCODE dbSUPER 10.3 +127.4 127369 6.9 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143 ATAD3B INTS11 ENSG00000240731 LINC00115 SLC35E2 CCNL2 LOC105378580 ANKRD65 SCNN1D ENSG00000229905
GH01H001461 1.1 Ensembl ENCODE 12.7 -27.8 -27751 1.4 ELF3 HDGF PKNOX1 TFAP4 MXI1 SAP130 ARID4B CEBPG POLR2A FOXK2 LINC01770 VWA1 ANKRD65 MTCO1P12 LOC105378585 SLC35E2 ATAD3C GC01P001458 ATAD3B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01770 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01770 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000000192 -1327 1001 HDGF ATF1 RB1 ARID4B SIN3A ZBTB40 RARA GLIS2 EGR1 ETV6

Genomic Locations for LINC01770 Gene

Genomic Locations for LINC01770 Gene
chr1:1,430,157-1,434,573
(GRCh38/hg38)
Size:
4,417 bases
Orientation:
Minus strand
chr1:1,365,919-1,369,953
(GRCh37/hg19)

Genomic View for LINC01770 Gene

Genes around LINC01770 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01770 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01770 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01770 Gene

Proteins for LINC01770 Gene

Post-translational modifications for LINC01770 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01770 Gene

Domains & Families for LINC01770 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01770 Gene

Function for LINC01770 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01770 Gene

Localization for LINC01770 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01770 Gene

Pathways & Interactions for LINC01770 Gene

SuperPathways for LINC01770 Gene

No Data Available

Interacting Proteins for LINC01770 Gene

Gene Ontology (GO) - Biological Process for LINC01770 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01770 Gene

Drugs & Compounds for LINC01770 Gene

No Compound Related Data Available

Transcripts for LINC01770 Gene

mRNA/cDNA for LINC01770 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01770 Gene

No ASD Table

Relevant External Links for LINC01770 Gene

GeneLoc Exon Structure for
LINC01770
ECgene alternative splicing isoforms for
LINC01770

Expression for LINC01770 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01770 Gene

Orthologs for LINC01770 Gene

Evolution for LINC01770 Gene

ENSEMBL:
Gene Tree for LINC01770 (if available)
TreeFam:
Gene Tree for LINC01770 (if available)

No data available for Orthologs for LINC01770 Gene

Paralogs for LINC01770 Gene

No data available for Paralogs for LINC01770 Gene

Variants for LINC01770 Gene

Sequence variations from dbSNP and Humsavar for LINC01770 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000373339 -- 1,430,748(+) GCGGC(C/T)GTTTC intron-variant, nc-transcript-variant
rs1000600492 -- 1,433,594(+) CTGAC(C/G)CGTCC intron-variant, upstream-variant-2KB
rs1000708901 -- 1,429,700(+) CCCTC(A/G)GCCCC downstream-variant-500B
rs1000784823 -- 1,431,280(+) TGAGG(A/G)GGAGG intron-variant, upstream-variant-2KB
rs1000862244 -- 1,432,274(+) AGGGG(C/T)CCTGC intron-variant, upstream-variant-2KB

Relevant External Links for LINC01770 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01770

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01770 Gene

Disorders for LINC01770 Gene

Relevant External Links for LINC01770

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01770

No disorders were found for LINC01770 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01770 Gene

Publications for LINC01770 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for LINC01770 Gene

Sources for LINC01770 Gene

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