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Aliases for LINC01721 Gene

Subcategory (RNA class) for LINC01721 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01721 Gene

  • Long Intergenic Non-Protein Coding RNA 1721 2 3
  • Uncharacterized LOC400839 5
  • FLJ33581 5

External Ids for LINC01721 Gene

Summaries for LINC01721 Gene

GeneCards Summary for LINC01721 Gene

LINC01721 (Long Intergenic Non-Protein Coding RNA 1721) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01721 Gene

Genomics for LINC01721 Gene

Regulatory Elements for LINC01721 Gene

Enhancers for LINC01721 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F024208 0.5 ENCODE 0.4 +9.1 9063 0.1 CTCF ZBTB33 RAD21 LINC01721 GC20P024237
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01721 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01721 Gene

Chromosome:
20
Start:
24,199,767 bp from pter
End:
24,224,588 bp from pter
Size:
24,822 bases
Orientation:
Plus strand

Genomic View for LINC01721 Gene

Genes around LINC01721 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01721 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01721 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01721 Gene

Proteins for LINC01721 Gene

Post-translational modifications for LINC01721 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01721 Gene

Domains & Families for LINC01721 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01721 Gene

Function for LINC01721 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01721 Gene

Localization for LINC01721 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01721 Gene

Pathways & Interactions for LINC01721 Gene

SuperPathways for LINC01721 Gene

No Data Available

Interacting Proteins for LINC01721 Gene

Gene Ontology (GO) - Biological Process for LINC01721 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01721 Gene

Transcripts for LINC01721 Gene

mRNA/cDNA for LINC01721 Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC01721 Gene

Uncharacterized LOC400839:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01721 Gene

No ASD Table

Relevant External Links for LINC01721 Gene

GeneLoc Exon Structure for
LINC01721
ECgene alternative splicing isoforms for
LINC01721

Expression for LINC01721 Gene

SOURCE GeneReport for Unigene cluster for LINC01721 Gene:

Hs.651965
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01721 Gene

Orthologs for LINC01721 Gene

Evolution for LINC01721 Gene

ENSEMBL:
Gene Tree for LINC01721 (if available)
TreeFam:
Gene Tree for LINC01721 (if available)

No data available for Orthologs for LINC01721 Gene

Paralogs for LINC01721 Gene

No data available for Paralogs for LINC01721 Gene

Variants for LINC01721 Gene

Sequence variations from dbSNP and Humsavar for LINC01721 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1009810 -- 24,201,978(-) GGCCT(C/T)GAACT intron-variant
rs1009811 -- 24,201,933(-) TCAGC(A/G)TGCGG intron-variant
rs10470064 -- 24,212,887(+) AAGGC(A/G)AGCAG intron-variant
rs10719229 -- 24,209,549(+) CCTAT(-/C)CCCAT intron-variant
rs11087455 -- 24,207,714(+) AAAAA(-/A)CAACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01721 Gene

Variant ID Type Subtype PubMed ID
nsv9793 CNV gain+loss 18304495
nsv833945 CNV loss 17160897
nsv522873 CNV gain 19592680
nsv1138930 CNV deletion 24896259
esv8025 CNV loss 19470904
esv2598710 CNV deletion 19546169

Relevant External Links for LINC01721 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01721

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01721 Gene

Disorders for LINC01721 Gene

Relevant External Links for LINC01721

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01721

No disorders were found for LINC01721 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01721 Gene

Publications for LINC01721 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for LINC01721 Gene

Sources for LINC01721 Gene

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