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Aliases for LINC01683 Gene

Subcategory (RNA class) for LINC01683 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01683 Gene

  • Long Intergenic Non-Protein Coding RNA 1683 2 3 5
  • C21orf40 3

External Ids for LINC01683 Gene

Summaries for LINC01683 Gene

GeneCards Summary for LINC01683 Gene

LINC01683 (Long Intergenic Non-Protein Coding RNA 1683) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01683 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01683 Gene

Genomics for LINC01683 Gene

Regulatory Elements for LINC01683 Gene

Enhancers for LINC01683 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H019830 0.4 FANTOM5 0.2 +69.0 69030 0 NFE2 GC21M019792 LINC01683
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01683 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01683 Gene

Chromosome:
21
Start:
19,885,221 bp from pter
End:
19,899,790 bp from pter
Size:
14,570 bases
Orientation:
Minus strand

Genomic View for LINC01683 Gene

Genes around LINC01683 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01683 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01683 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01683 Gene

Proteins for LINC01683 Gene

Post-translational modifications for LINC01683 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01683 Gene

Domains & Families for LINC01683 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01683 Gene

Function for LINC01683 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01683 Gene

Localization for LINC01683 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01683 Gene

Pathways & Interactions for LINC01683 Gene

SuperPathways for LINC01683 Gene

No Data Available

Interacting Proteins for LINC01683 Gene

Gene Ontology (GO) - Biological Process for LINC01683 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01683 Gene

Drugs & Compounds for LINC01683 Gene

No Compound Related Data Available

Transcripts for LINC01683 Gene

mRNA/cDNA for LINC01683 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01683 Gene

No ASD Table

Relevant External Links for LINC01683 Gene

GeneLoc Exon Structure for
LINC01683
ECgene alternative splicing isoforms for
LINC01683

Expression for LINC01683 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01683 Gene

Orthologs for LINC01683 Gene

Evolution for LINC01683 Gene

ENSEMBL:
Gene Tree for LINC01683 (if available)
TreeFam:
Gene Tree for LINC01683 (if available)

No data available for Orthologs for LINC01683 Gene

Paralogs for LINC01683 Gene

No data available for Paralogs for LINC01683 Gene

Variants for LINC01683 Gene

Sequence variations from dbSNP and Humsavar for LINC01683 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000130496 -- 19,888,439(+) ACAAG(A/G)ATGAA intron-variant
rs1000197348 -- 19,885,445(+) GACTG(G/T)ATAAA intron-variant
rs1000316280 -- 19,899,359(+) TGCTT(C/T)ACTAC intron-variant, upstream-variant-2KB
rs1000390046 -- 19,891,217(+) TTCTT(G/T)TCCCT intron-variant
rs1000583430 -- 19,889,145(+) AAGGA(A/T)CTTGA intron-variant

Relevant External Links for LINC01683 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01683

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01683 Gene

Disorders for LINC01683 Gene

Relevant External Links for LINC01683

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01683

No disorders were found for LINC01683 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01683 Gene

Publications for LINC01683 Gene

  1. The DNA sequence of human chromosome 21. (PMID: 10830953) Hattori M … Chromosome 21 mapping and sequencing consortium (Nature 2000) 3 60

Products for LINC01683 Gene

Sources for LINC01683 Gene

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