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Aliases for LINC01648 Gene

Subcategory (RNA class) for LINC01648 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01648 Gene

  • Long Intergenic Non-Protein Coding RNA 1648 2 3 5

External Ids for LINC01648 Gene

Summaries for LINC01648 Gene

GeneCards Summary for LINC01648 Gene

LINC01648 (Long Intergenic Non-Protein Coding RNA 1648) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01648 Gene

Genomics for LINC01648 Gene

Regulatory Elements for LINC01648 Gene

Enhancers for LINC01648 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G029972 1.4 FANTOM5 Ensembl ENCODE 0.2 +63.5 63451 2.5 PKNOX1 INSM2 DNMT3B ZEB1 ZNF766 ZNF366 SCRT2 FOS KLF11 SP3 MATN1 LINC01648 ENSG00000270927
GH01G030083 1.1 Ensembl ENCODE 0.2 -47.1 -47124 3.5 RB1 ZNF133 ZNF76 KLF17 ZNF2 ZBTB40 RAD21 GLIS2 ZNF366 KLF7 TMEM200B PIR34057 LINC01648
GH01G029983 0.8 Ensembl ENCODE 0.2 +52.2 52182 3.4 PKNOX1 GATA3 ZIC2 NR2F2 ZNF507 FOXA1 LINC01648 ENSG00000270927
GH01G029923 0.5 ENCODE 0.1 +113.3 113255 1.9 CTBP2 MNT ZNF623 ETS1 ENSG00000270927 LINC01648
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01648 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01648 Gene

30,013,952 bp from pter
30,037,612 bp from pter
23,661 bases
Minus strand

Genomic View for LINC01648 Gene

Genes around LINC01648 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01648 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01648 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01648 Gene

Proteins for LINC01648 Gene

Post-translational modifications for LINC01648 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01648 Gene

Domains & Families for LINC01648 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01648 Gene

Function for LINC01648 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01648 Gene

Localization for LINC01648 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01648 Gene

Pathways & Interactions for LINC01648 Gene

SuperPathways for LINC01648 Gene

No Data Available

Interacting Proteins for LINC01648 Gene

Gene Ontology (GO) - Biological Process for LINC01648 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01648 Gene

Drugs & Compounds for LINC01648 Gene

No Compound Related Data Available

Transcripts for LINC01648 Gene

mRNA/cDNA for LINC01648 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01648 Gene

No ASD Table

Relevant External Links for LINC01648 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01648 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01648 Gene

Orthologs for LINC01648 Gene

Evolution for LINC01648 Gene

Gene Tree for LINC01648 (if available)
Gene Tree for LINC01648 (if available)

No data available for Orthologs for LINC01648 Gene

Paralogs for LINC01648 Gene

No data available for Paralogs for LINC01648 Gene

Variants for LINC01648 Gene

Sequence variations from dbSNP and Humsavar for LINC01648 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000168909 -- 30,016,056(+) GCTCT(A/G)CCATT intron-variant
rs1000393439 -- 30,021,074(+) ATGCT(A/T)GTCAG intron-variant
rs1000450533 -- 30,015,734(+) GGTGA(C/T)TCTTA intron-variant
rs1000509280 -- 30,017,189(+) ATACA(C/T)GTGCC intron-variant
rs1000551042 -- 30,031,051(+) ACAAG(C/G)CCAGC intron-variant

Relevant External Links for LINC01648 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01648 Gene

Disorders for LINC01648 Gene

No disorders were found for LINC01648 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01648 Gene

Publications for LINC01648 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01648 Gene

Sources for LINC01648 Gene

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