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Aliases for LINC01634 Gene

Subcategory (RNA class) for LINC01634 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01634 Gene

  • Long Intergenic Non-Protein Coding RNA 1634 2 3
  • Uncharacterized LOC100192420 5
  • XXbac-B476C20.17 3
  • FLJ41941 5

External Ids for LINC01634 Gene

Summaries for LINC01634 Gene

GeneCards Summary for LINC01634 Gene

LINC01634 (Long Intergenic Non-Protein Coding RNA 1634) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01634 Gene

Genomics for LINC01634 Gene

Regulatory Elements for LINC01634 Gene

Enhancers for LINC01634 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F018022 0.7 FANTOM5 ENCODE 19.3 -5.4 -5351 2.3 CREB3L1 ZFP64 SIN3A ZNF2 GLIS2 ZNF143 REST ZNF610 GLIS1 NBN LINC01634 MICAL3 RHEBP3
GH22F018035 1.3 Ensembl ENCODE 15.4 +6.8 6782 1.6 TBP PKNOX1 SAP130 MAX CEBPG RAD21 NFYB RCOR1 THAP11 GATAD2A LINC01634 PEX26 ENSG00000225335 ENSG00000236890 GC22P018044
GH22F018030 1.2 Ensembl ENCODE 12.9 +3.4 3389 3.6 TBP CTCF JUN MAX SIN3A ZNF366 RCOR1 FOS MAFK BHLHE40 LINC01634 ENSG00000225335 ENSG00000236890 PEX26 GC22P018044
GH22F018048 1 Ensembl ENCODE 5 +19.2 19232 1.2 ATF1 ZNF687 USF1 RNF2 L3MBTL2 BHLHE40 USF2 ZEB2 RAD51 NFYB LINC01634 GC22P018053 GC22P018044
GH22F017902 0.9 ENCODE 5 -125.5 -125501 2.0 ZFHX2 TEAD4 EGR2 ENSG00000093100 MICAL3 LINC01634 PIR41738 GC22M017948 PIR51874
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC01634 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01634 Gene

Chromosome:
22
Start:
18,029,385 bp from pter
End:
18,037,968 bp from pter
Size:
8,584 bases
Orientation:
Plus strand

Genomic View for LINC01634 Gene

Genes around LINC01634 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01634 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01634 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01634 Gene

Proteins for LINC01634 Gene

Post-translational modifications for LINC01634 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01634 Gene

Domains & Families for LINC01634 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01634 Gene

Function for LINC01634 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01634 Gene

Localization for LINC01634 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01634 Gene

Pathways & Interactions for LINC01634 Gene

SuperPathways for LINC01634 Gene

No Data Available

Interacting Proteins for LINC01634 Gene

Gene Ontology (GO) - Biological Process for LINC01634 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01634 Gene

Transcripts for LINC01634 Gene

mRNA/cDNA for LINC01634 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LINC01634 Gene

Uncharacterized LOC100192420:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01634 Gene

No ASD Table

Relevant External Links for LINC01634 Gene

GeneLoc Exon Structure for
LINC01634
ECgene alternative splicing isoforms for
LINC01634

Expression for LINC01634 Gene

SOURCE GeneReport for Unigene cluster for LINC01634 Gene:

Hs.589947
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01634 Gene

Orthologs for LINC01634 Gene

Evolution for LINC01634 Gene

ENSEMBL:
Gene Tree for LINC01634 (if available)
TreeFam:
Gene Tree for LINC01634 (if available)

No data available for Orthologs for LINC01634 Gene

Paralogs for LINC01634 Gene

No data available for Paralogs for LINC01634 Gene

Variants for LINC01634 Gene

Sequence variations from dbSNP and Humsavar for LINC01634 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs10427905 -- 18,037,065(+) TCTGG(A/G)CAGCA nc-transcript-variant
rs10628609 -- 18,030,126(+) GCTAA(-/TGTT)TGTGT intron-variant
rs107321 -- 18,029,516(+) gatta(C/T)tgact nc-transcript-variant
rs1076115 -- 18,035,885(+) AACAC(C/T)ATGGG nc-transcript-variant
rs111526301 -- 18,031,231(+) CCTCT(A/G)CCTCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01634 Gene

Variant ID Type Subtype PubMed ID
dgv1280e212 CNV loss 25503493
esv3893428 CNV loss 25118596
nsv428385 CNV gain+loss 18775914
nsv834121 CNV gain 17160897

Relevant External Links for LINC01634 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01634

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01634 Gene

Disorders for LINC01634 Gene

Relevant External Links for LINC01634

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01634

No disorders were found for LINC01634 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01634 Gene

Publications for LINC01634 Gene

No publications were found for LINC01634 Gene.

Products for LINC01634 Gene

Sources for LINC01634 Gene

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