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Aliases for LINC01621 Gene

Subcategory (RNA class) for LINC01621 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01621 Gene

  • Long Intergenic Non-Protein Coding RNA 1621 2 3 5
  • Chromosome 6 Open Reading Frame 7 2
  • C6orf7 3

External Ids for LINC01621 Gene

Previous HGNC Symbols for LINC01621 Gene

  • C6orf7

Summaries for LINC01621 Gene

GeneCards Summary for LINC01621 Gene

LINC01621 (Long Intergenic Non-Protein Coding RNA 1621) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01621 Gene

Genomics for LINC01621 Gene

Regulatory Elements for LINC01621 Gene

Enhancers for LINC01621 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F079878 0.6 ENCODE 0.8 0.0 -35 0.1 HNF4G LINC01621 ELOVL4 GC06M079947 GC06M079948
GH06F079879 0.2 ENCODE 0.8 -0.8 -803 0.8 RAD21 LINC01621 ELOVL4 GC06M079947 GC06M079948
GH06F079874 0.4 Ensembl 0.8 +3.4 3394 1.0 GATA3 CEBPB ELOVL4 ENSG00000233835 LINC01621
GH06F079872 1.4 Ensembl ENCODE 0.4 +5.3 5336 1.2 GATA3 PKNOX1 CEBPB FOS EP300 TCF7L2 ELOVL4 ENSG00000233835 LINC01621
GH06F079894 0.6 ENCODE 0.3 -17.2 -17228 1.6 CTCF ZNF654 SMC3 TRIM22 FOS RAD21 PRDM1 ELOVL4 LINC01621 GC06M079947 GC06M079948
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC01621 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01621 Gene

Chromosome:
6
Start:
79,803,582 bp from pter
End:
79,878,494 bp from pter
Size:
74,913 bases
Orientation:
Minus strand

Genomic View for LINC01621 Gene

Genes around LINC01621 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01621 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01621 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01621 Gene

Proteins for LINC01621 Gene

Post-translational modifications for LINC01621 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01621 Gene

Domains & Families for LINC01621 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01621 Gene

Function for LINC01621 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01621 Gene

Localization for LINC01621 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01621 Gene

Pathways & Interactions for LINC01621 Gene

SuperPathways for LINC01621 Gene

No Data Available

Interacting Proteins for LINC01621 Gene

Gene Ontology (GO) - Biological Process for LINC01621 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01621 Gene

Transcripts for LINC01621 Gene

mRNA/cDNA for LINC01621 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01621 Gene

No ASD Table

Relevant External Links for LINC01621 Gene

GeneLoc Exon Structure for
LINC01621
ECgene alternative splicing isoforms for
LINC01621

Expression for LINC01621 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01621 Gene:

LINC01621
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01621 Gene

Orthologs for LINC01621 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01621 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC101057754 34
  • 98.46 (n)
Species where no ortholog for LINC01621 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01621 Gene

ENSEMBL:
Gene Tree for LINC01621 (if available)
TreeFam:
Gene Tree for LINC01621 (if available)

Paralogs for LINC01621 Gene

No data available for Paralogs for LINC01621 Gene

Variants for LINC01621 Gene

Sequence variations from dbSNP and Humsavar for LINC01621 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10806178 -- 79,809,479(+) TATCA(A/G)GTCAT intron-variant
rs10943663 -- 79,814,168(+) TCTAC(C/T)ATTCT upstream-variant-2KB
rs111258697 -- 79,811,385(+) AATTT(A/T)TCTTC intron-variant
rs111755113 -- 79,813,808(+) AGACT(C/G)TCTTT upstream-variant-2KB
rs111979812 -- 79,808,795(+) AACAA(C/T)ACTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01621 Gene

Variant ID Type Subtype PubMed ID
esv2669307 CNV deletion 23128226
esv2732337 CNV deletion 23290073
esv3609700 CNV loss 21293372
esv3609702 CNV loss 21293372
esv3609703 CNV loss 21293372
esv3890892 CNV loss 25118596
nsv474015 CNV novel sequence insertion 20440878
nsv474032 CNV novel sequence insertion 20440878
nsv476802 CNV novel sequence insertion 20440878
nsv481212 CNV novel sequence insertion 20440878
nsv481385 CNV novel sequence insertion 20440878
nsv516620 CNV loss 19592680
nsv523718 CNV loss 19592680
nsv823758 CNV loss 20364138
nsv950474 CNV duplication 24416366

Relevant External Links for LINC01621 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01621

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01621 Gene

Disorders for LINC01621 Gene

Relevant External Links for LINC01621

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01621
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01621

No disorders were found for LINC01621 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01621 Gene

Publications for LINC01621 Gene

  1. Genome-wide analysis of BMI in adolescents and young adults reveals additional insight into the effects of genetic loci over the life course. (PMID: 23669352) Graff M. … Berndt S.I. (Hum. Mol. Genet. 2013) 3 64
  2. Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study. (PMID: 20522523) KasperaviciAte D. … Sisodiya S.M. (Brain 2010) 3 64

Products for LINC01621 Gene

Sources for LINC01621 Gene

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