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Aliases for LINC01620 Gene

Subcategory (RNA class) for LINC01620 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01620 Gene

  • Long Intergenic Non-Protein Coding RNA 1620 2 3 5
  • C20orf62 3 4
  • Chromosome 20 Open Reading Frame 62 2
  • Uncharacterized Protein C20orf62 3
  • DJ1013A22.3 3

External Ids for LINC01620 Gene

Previous HGNC Symbols for LINC01620 Gene

  • C20orf62

Summaries for LINC01620 Gene

GeneCards Summary for LINC01620 Gene

LINC01620 (Long Intergenic Non-Protein Coding RNA 1620) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01620 Gene

Genomics for LINC01620 Gene

Regulatory Elements for LINC01620 Gene

Enhancers for LINC01620 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F044392 1.6 FANTOM5 Ensembl ENCODE 10.5 +70.6 70587 4.9 MLX ARID4B DMAP1 YY1 SLC30A9 PAF1 SP5 NFYC ZHX2 MXD4 HNF4A OSER1 LINC01430 LINC01620 OSER1-AS1 HNF4A-AS1 GC20P044393
GH20F044493 1.4 FANTOM5 Ensembl ENCODE 11.1 -30.6 -30607 4.8 PKNOX1 JUN CEBPG EBF1 ZNF664 POLR2A SCRT2 EED FOS FOSL2 PKIG TTPAL SERINC3 RPL37AP1 LINC01620 LINC01430 OSER1 ADA STK4 GC20P044495
GH20F044216 1.4 FANTOM5 Ensembl ENCODE 10.5 +246.5 246511 3.7 ELF3 ARID4B ZNF48 RAD21 ZNF143 DEK MIXL1 THAP11 ZNF654 SP5 OSER1 FITM2 LINC01430 LINC01620 OSER1-AS1 JPH2 GDAP1L1
GH20F044421 1.3 Ensembl ENCODE 11.3 +35.8 35825 15.2 PKNOX1 ATF1 MLX ARID4B DMAP1 YBX1 YY1 SLC30A9 ZNF143 PAF1 HNF4A LOC105372629 FITM2 LINC01430 LINC01620 PKIG MIR3646
GH20F044593 1.4 FANTOM5 Ensembl ENCODE 9.9 -133.0 -132952 9.0 THRB ELK1 SCRT2 ETV6 FOS CREM ZBTB11 ZNF623 NR2F2 IKZF1 PKIG SERINC3 ADA LINC01430 LINC01620 TTPAL PIR61280
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01620 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01620 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001837668 -1452 399 RAD21

Genomic Location for LINC01620 Gene

Chromosome:
20
Start:
44,436,172 bp from pter
End:
44,465,349 bp from pter
Size:
29,178 bases
Orientation:
Minus strand

Genomic View for LINC01620 Gene

Genes around LINC01620 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01620 Gene

Proteins for LINC01620 Gene

  • Protein details for LINC01620 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4KN68-CT062_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01620
    Protein Accession:
    Q4KN68
    Secondary Accessions:
    • A2A2S9
    • Q5QPC4

    Protein attributes for LINC01620 Gene

    Size:
    170 amino acids
    Molecular mass:
    19514 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LINC01620 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC01620 Gene

Post-translational modifications for LINC01620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01620 Gene

Domains & Families for LINC01620 Gene

Protein Domains for LINC01620 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01620: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01620 Gene

Function for LINC01620 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01620 Gene

Localization for LINC01620 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01620 gene
Compartment Confidence
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01620 Gene

Pathways & Interactions for LINC01620 Gene

SuperPathways for LINC01620 Gene

No Data Available

Interacting Proteins for LINC01620 Gene

Gene Ontology (GO) - Biological Process for LINC01620 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01620 Gene

Transcripts for LINC01620 Gene

mRNA/cDNA for LINC01620 Gene

(1) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01620 Gene

No ASD Table

Relevant External Links for LINC01620 Gene

GeneLoc Exon Structure for
LINC01620
ECgene alternative splicing isoforms for
LINC01620

Expression for LINC01620 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01620 Gene:

LINC01620
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01620 Gene

Orthologs for LINC01620 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01620 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20orf62 35
  • 77 (a)
OneToOne
Species where no ortholog for LINC01620 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01620 Gene

ENSEMBL:
Gene Tree for LINC01620 (if available)
TreeFam:
Gene Tree for LINC01620 (if available)

Paralogs for LINC01620 Gene

No data available for Paralogs for LINC01620 Gene

Variants for LINC01620 Gene

Sequence variations from dbSNP and Humsavar for LINC01620 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs10485702 -- 44,466,857(+) AACTA(A/G)GTCCG upstream-variant-2KB
rs111234546 -- 44,458,022(+) AGAGA(C/G)CGGAG intron-variant
rs111322763 -- 44,456,432(+) CTTAT(-/A)AAAAA intron-variant
rs111891971 -- 44,457,182(+) CCCTG(A/C/T)GGCCC intron-variant
rs112108106 -- 44,466,832(+) TGGTA(C/G)GTTTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC01620 Gene

Variant ID Type Subtype PubMed ID
nsv586065 CNV gain 21841781
nsv1061719 CNV gain 25217958

Variation tolerance for LINC01620 Gene

Gene Damage Index Score: 0.24; 5.44% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01620 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01620

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01620 Gene

Disorders for LINC01620 Gene

Relevant External Links for LINC01620

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01620
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01620

No disorders were found for LINC01620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01620 Gene

Publications for LINC01620 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01620 Gene

Sources for LINC01620 Gene

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