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Aliases for LINC01620 Gene

Subcategory (RNA class) for LINC01620 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01620 Gene

  • Long Intergenic Non-Protein Coding RNA 1620 2 3 5
  • C20orf62 3 4
  • Chromosome 20 Open Reading Frame 62 2
  • Uncharacterized Protein C20orf62 3
  • DJ1013A22.3 3

External Ids for LINC01620 Gene

Previous HGNC Symbols for LINC01620 Gene

  • C20orf62

Summaries for LINC01620 Gene

GeneCards Summary for LINC01620 Gene

LINC01620 (Long Intergenic Non-Protein Coding RNA 1620) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01620 Gene

Genomics for LINC01620 Gene

Regulatory Elements for LINC01620 Gene

Enhancers for LINC01620 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G044392 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +70.6 70587 4.9 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 PAF1 SP5 ZHX2 MXD4 HNF4A LINC01620 LINC01430 OSER1-AS1 HNF4A-AS1 GC20P044393
GH20G044216 1.7 FANTOM5 Ensembl ENCODE dbSUPER 10.5 +246.5 246511 3.7 ELF3 RB1 ZSCAN4 ARID4B ZNF48 RAD21 ZNF143 MIXL1 DEK THAP11 OSER1 FITM2 LINC01430 LINC01620 OSER1-AS1 JPH2 GDAP1L1
GH20G044438 1.4 Ensembl ENCODE dbSUPER 11.8 +21.8 21761 10.0 ELF3 ZBTB40 RAD21 YY1 ZNF121 RCOR1 SMARCC1 CEBPB ZNF623 NR2F2 LINC01620 LINC01430 MIR3646
GH20G044397 1.6 Ensembl ENCODE dbSUPER 10.3 +56.1 56095 22.8 HDGF PKNOX1 FOXA2 MLX ARNT CREB3L1 ZFP64 ARID4B YBX1 DMAP1 IFT52 FITM2 LINC01620 LINC01430 HNF4A OSER1-AS1 MIR3646
GH20G044594 1.6 FANTOM5 Ensembl ENCODE dbSUPER 9.9 -129.5 -129484 1.3 TAL1 UBTF EBF1 ZNF644 RELA FOSL1 TCF12 ELK1 EED FOS PKIG SERINC3 ADA LINC01430 LINC01620 TTPAL PIR61280
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01620 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01620 Gene

Chromosome:
20
Start:
44,436,172 bp from pter
End:
44,465,349 bp from pter
Size:
29,178 bases
Orientation:
Minus strand

Genomic View for LINC01620 Gene

Genes around LINC01620 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01620 Gene

Proteins for LINC01620 Gene

  • Protein details for LINC01620 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4KN68-CT062_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01620
    Protein Accession:
    Q4KN68
    Secondary Accessions:
    • A2A2S9
    • Q5QPC4

    Protein attributes for LINC01620 Gene

    Size:
    170 amino acids
    Molecular mass:
    19514 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LINC01620 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC01620 Gene

Post-translational modifications for LINC01620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01620 Gene

Domains & Families for LINC01620 Gene

Protein Domains for LINC01620 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01620: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01620 Gene

Function for LINC01620 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01620 Gene

Localization for LINC01620 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01620 gene
Compartment Confidence
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01620 Gene

Pathways & Interactions for LINC01620 Gene

SuperPathways for LINC01620 Gene

No Data Available

Interacting Proteins for LINC01620 Gene

Gene Ontology (GO) - Biological Process for LINC01620 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01620 Gene

Drugs & Compounds for LINC01620 Gene

No Compound Related Data Available

Transcripts for LINC01620 Gene

mRNA/cDNA for LINC01620 Gene

(1) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01620 Gene

No ASD Table

Relevant External Links for LINC01620 Gene

GeneLoc Exon Structure for
LINC01620
ECgene alternative splicing isoforms for
LINC01620

Expression for LINC01620 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01620 Gene:

LINC01620
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01620 Gene

Orthologs for LINC01620 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01620 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20orf62 35
  • 77 (a)
OneToOne
Species where no ortholog for LINC01620 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01620 Gene

ENSEMBL:
Gene Tree for LINC01620 (if available)
TreeFam:
Gene Tree for LINC01620 (if available)

Paralogs for LINC01620 Gene

No data available for Paralogs for LINC01620 Gene

Variants for LINC01620 Gene

Sequence variations from dbSNP and Humsavar for LINC01620 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000182356 -- 44,466,159(+) CCTGG(A/G)AATGT upstream-variant-2KB
rs1000659205 -- 44,466,411(+) TGGGT(A/G)TAGGG upstream-variant-2KB
rs1000687725 -- 44,461,454(+) ATCTC(A/G)TTTCA intron-variant
rs1000703258 -- 44,463,765(+) CAAAC(G/T)ACTTC intron-variant
rs1000761003 -- 44,461,785(+) TAACA(C/T)TTATT intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01620 Gene

Variant ID Type Subtype PubMed ID
nsv1061719 CNV gain 25217958
nsv586065 CNV gain 21841781

Variation tolerance for LINC01620 Gene

Gene Damage Index Score: 0.24; 5.44% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01620 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01620

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01620 Gene

Disorders for LINC01620 Gene

Relevant External Links for LINC01620

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01620
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01620

No disorders were found for LINC01620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01620 Gene

Publications for LINC01620 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01620 Gene

Sources for LINC01620 Gene

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