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Aliases for LINC01617 Gene

Subcategory (RNA class) for LINC01617 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01617 Gene

  • Long Intergenic Non-Protein Coding RNA 1617 2 3
  • Chromosome 8 Open Reading Frame 23 2
  • Non-Protein Coding RNA 249 2
  • Uncharacterized NCRNA00249 3
  • XLOC_006844 3
  • NCRNA00249 3
  • C8orf23 3

External Ids for LINC01617 Gene

Previous HGNC Symbols for LINC01617 Gene

  • C8orf23
  • NCRNA00249

Summaries for LINC01617 Gene

GeneCards Summary for LINC01617 Gene

LINC01617 (Long Intergenic Non-Protein Coding RNA 1617) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01617 Gene

Genomics for LINC01617 Gene

Regulatory Elements for LINC01617 Gene

Enhancers for LINC01617 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F073892 1.1 FANTOM5 Ensembl ENCODE 0.4 +14.1 14110 0.6 GATA3 ZNF318 RAD51 EGR1 NFYB BHLHE40 USF2 ELOC TMEM70 STAU2 ENSG00000253596 GDAP1 UBE2W LINC01617 PIR51756
GH08F073887 0.8 Ensembl ENCODE 0.4 +9.4 9351 0.9 PKNOX1 GATA3 ESRRA MNT ELOC TMEM70 STAU2 UBE2W LINC01617 PIR51756
GH08F073895 0.7 Ensembl ENCODE 0.3 +16.7 16696 1.4 TCF7 ZBTB33 TCF7L2 STAU2 PIR51756 LINC01617
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01617 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01617 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001442209 -405 3601 HDGF PKNOX1 ARID4B SIN3A YY1 ZNF143 SP3 SP5 NFYC ZHX2

Genomic Location for LINC01617 Gene

73,879,005 bp from pter
73,904,734 bp from pter
25,730 bases
Plus strand

Genomic View for LINC01617 Gene

Genes around LINC01617 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01617 Gene

Proteins for LINC01617 Gene

Post-translational modifications for LINC01617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01617 Gene

Domains & Families for LINC01617 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01617 Gene

Function for LINC01617 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01617 Gene

Localization for LINC01617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01617 Gene

Pathways & Interactions for LINC01617 Gene

SuperPathways for LINC01617 Gene

No Data Available

Interacting Proteins for LINC01617 Gene

Gene Ontology (GO) - Biological Process for LINC01617 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01617 Gene

Transcripts for LINC01617 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01617 Gene

No ASD Table

Relevant External Links for LINC01617 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for LINC01617 Gene

Expression for LINC01617 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01617 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01617 Gene

Orthologs for LINC01617 Gene

No data available for Orthologs and Evolution for LINC01617 Gene

Paralogs for LINC01617 Gene

No data available for Paralogs for LINC01617 Gene

Variants for LINC01617 Gene

Sequence variations from dbSNP and Humsavar for LINC01617 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10093248 -- 73,881,551(+) tatat(A/T)ttttt intron-variant
rs10107371 -- 73,903,157(+) tctct(C/T)ttttt intron-variant
rs10217047 -- 73,896,975(+) caccc(A/C)caaac intron-variant
rs10957689 -- 73,897,795(+) gtgca(A/C)ccatc intron-variant
rs111232234 -- 73,890,576(+) CAGGC(A/G)TGAGC intron-variant

Relevant External Links for LINC01617 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01617 Gene

Disorders for LINC01617 Gene

No disorders were found for LINC01617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01617 Gene

Publications for LINC01617 Gene

  1. Circulating lncRNAs associated with occurrence of colorectal cancer progression. (PMID: 26328256) Shi J. … Hu S. (Am J Cancer Res 2015) 2 3 64

Products for LINC01617 Gene

Sources for LINC01617 Gene

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