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Aliases for LINC01602 Gene

Subcategory (RNA class) for LINC01602 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01602 Gene

  • Long Intergenic Non-Protein Coding RNA 1602 2 3 5
  • Uncharacterized Gene T1560 3
  • T1560 3

External Ids for LINC01602 Gene

Summaries for LINC01602 Gene

GeneCards Summary for LINC01602 Gene

LINC01602 (Long Intergenic Non-Protein Coding RNA 1602) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01602 Gene

Genomics for LINC01602 Gene

Regulatory Elements for LINC01602 Gene

Enhancers for LINC01602 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F057860 1.1 FANTOM5 Ensembl ENCODE 9.2 -116.8 -116757 1.6 CTCF HNF4G MNT RAD21 YY1 LINC01602 GC08P057857 ENSG00000253376
GH08F057854 0.8 ENCODE 9.5 -122.9 -122933 1.1 ELF3 PKNOX1 FEZF1 RAD21 RARA YY1 CTBP1 CBX5 STAT2 ETV6 LINC01602 LOC105375856 GC08M057825
GH08F057987 0.5 ENCODE 0.4 +9.6 9606 1.4 JUND RFX1 RAD21 YY1 LINC01602 GC08P057996
GH08F057930 1 Ensembl ENCODE 0.2 -47.0 -46977 1.1 TAL1 MAX FEZF1 ZIC2 ZNF366 NCOR1 PRDM10 KLF7 ZEB2 ZNF843 GC08P057898 LINC01602
GH08F057928 0.9 ENCODE 0.2 -48.9 -48860 1.5 HDAC1 CBX3 PKNOX1 ARNT NFRKB FEZF1 ZNF766 FOS JUNB CREB3 GC08P057898 LINC01602
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01602 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01602 Gene

Chromosome:
8
Start:
57,978,358 bp from pter
End:
57,984,126 bp from pter
Size:
5,769 bases
Orientation:
Plus strand

Genomic View for LINC01602 Gene

Genes around LINC01602 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01602 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01602 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01602 Gene

Proteins for LINC01602 Gene

Post-translational modifications for LINC01602 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01602 Gene

Domains & Families for LINC01602 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01602 Gene

Function for LINC01602 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01602 Gene

Localization for LINC01602 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01602 Gene

Pathways & Interactions for LINC01602 Gene

SuperPathways for LINC01602 Gene

No Data Available

Interacting Proteins for LINC01602 Gene

Gene Ontology (GO) - Biological Process for LINC01602 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01602 Gene

Transcripts for LINC01602 Gene

mRNA/cDNA for LINC01602 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01602 Gene

No ASD Table

Relevant External Links for LINC01602 Gene

GeneLoc Exon Structure for
LINC01602
ECgene alternative splicing isoforms for
LINC01602

Expression for LINC01602 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01602 Gene:

LINC01602
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01602 Gene

Orthologs for LINC01602 Gene

Evolution for LINC01602 Gene

ENSEMBL:
Gene Tree for LINC01602 (if available)
TreeFam:
Gene Tree for LINC01602 (if available)

No data available for Orthologs for LINC01602 Gene

Paralogs for LINC01602 Gene

No data available for Paralogs for LINC01602 Gene

Variants for LINC01602 Gene

Sequence variations from dbSNP and Humsavar for LINC01602 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10106801 -- 57,978,191(+) ttttt(G/T)tgtac upstream-variant-2KB
rs117336014 -- 57,976,818(+) TATTC(C/T)TGTTG upstream-variant-2KB
rs118052726 -- 57,977,718(+) CATAA(A/G)TGAAA upstream-variant-2KB
rs11993657 -- 57,981,980(+) TATTA(A/C)CTCTT intron-variant
rs137871114 -- 57,978,041(+) CATGT(A/G)AAAAT upstream-variant-2KB

Relevant External Links for LINC01602 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01602

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01602 Gene

Disorders for LINC01602 Gene

Relevant External Links for LINC01602

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01602

No disorders were found for LINC01602 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01602 Gene

Publications for LINC01602 Gene

  1. TTF-2 stimulates expression of 17 genes, including one novel thyroid- specific gene which might be involved in thyroid development. (PMID: 15223130) Hishinuma A. … Ieiri T. (Mol. Cell. Endocrinol. 2004) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01602 Gene

Sources for LINC01602 Gene

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