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Aliases for LINC01600 Gene

Subcategory (RNA class) for LINC01600 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01600 Gene

  • Long Intergenic Non-Protein Coding RNA 1600 2 3
  • C6orf195 3 4
  • Chromosome 6 Open Reading Frame 195 2
  • BA145H9.2 3

External Ids for LINC01600 Gene

Previous HGNC Symbols for LINC01600 Gene

  • C6orf195

Summaries for LINC01600 Gene

GeneCards Summary for LINC01600 Gene

LINC01600 (Long Intergenic Non-Protein Coding RNA 1600) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01600 Gene

Genomics for LINC01600 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for LINC01600 Gene

Chromosome:
6
Start:
2,621,913 bp from pter
End:
2,635,064 bp from pter
Size:
13,152 bases
Orientation:
Minus strand

Genomic View for LINC01600 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for LINC01600 Gene

No data available for Regulatory Elements for LINC01600 Gene

Proteins for LINC01600 Gene

  • Protein details for LINC01600 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96MT4-CF195_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01600
    Protein Accession:
    Q96MT4
    Secondary Accessions:
    • Q3SY08
    • Q3SY09
    • Q3SY10
    • Q5TAW4

    Protein attributes for LINC01600 Gene

    Size:
    127 amino acids
    Molecular mass:
    13896 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01600 Gene

Proteomics data for LINC01600 Gene at MOPED

Post-translational modifications for LINC01600 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for LINC01600 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LINC01600 Gene

Domains & Families for LINC01600 Gene

Protein Domains for LINC01600 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01600: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01600 Gene

Function for LINC01600 Gene

Phenotypes for LINC01600 Gene

GenomeRNAi human phenotypes for LINC01600:
genes like me logo Genes that share phenotypes with LINC01600: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01600 Gene

Localization for LINC01600 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01600 Gene

Pathways & Interactions for LINC01600 Gene

SuperPathways for LINC01600 Gene

No Data Available

Interacting Proteins for LINC01600 Gene

Gene Ontology (GO) - Biological Process for LINC01600 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01600 Gene

Drugs & Compounds for LINC01600 Gene

No Compound Related Data Available

Transcripts for LINC01600 Gene

mRNA/cDNA for LINC01600 Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01600
    • Block miRNA regulation of LINC01600 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01600

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LINC01600 Gene

    No ASD Table

    Relevant External Links for LINC01600 Gene

    GeneLoc Exon Structure for
    LINC01600
    ECgene alternative splicing isoforms for
    LINC01600

    Expression for LINC01600 Gene

    mRNA expression in normal human tissues for LINC01600 Gene

    genes like me logo Genes that share expression patterns with LINC01600: view

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC01600 Gene

    Orthologs for LINC01600 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for LINC01600 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia C6H6orf195 35
    • 98.95 (n)
    • 97.64 (a)
    C6orf195 36
    • 98 (a)
    OneToOne
    Species with no ortholog for LINC01600:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for LINC01600 Gene

    ENSEMBL:
    Gene Tree for LINC01600 (if available)
    TreeFam:
    Gene Tree for LINC01600 (if available)

    Paralogs for LINC01600 Gene

    No data available for Paralogs for LINC01600 Gene

    Variants for LINC01600 Gene

    Sequence variations from dbSNP and Humsavar for LINC01600 Gene

    SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
    rs900398 -- 2,621,871(+) CTTGC(C/T)GTCAG downstream-variant-500B
    rs1038333 -- 2,626,725(-) TTTCC(A/C)CATGA intron-variant
    rs1150656 -- 2,624,028(+) AGCTT(G/T)TATAA utr-variant-5-prime, nc-transcript-variant
    rs1545849 -- 2,622,677(+) CACTT(C/T)AGCTC downstream-variant-500B, nc-transcript-variant
    rs2794565 -- 2,621,665(+) TAAGA(C/T)AGAAG downstream-variant-500B

    Variation tolerance for LINC01600 Gene

    Residual Variation Intolerance Score: 95.52% of all genes are more intolerant (likely to be disease-causing)
    Gene Damage Index Score: 4.42; 63.87% of all genes are more intolerant (likely to be disease-causing)

    Relevant External Links for LINC01600 Gene

    HapMap Linkage Disequilibrium report
    LINC01600

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01600 Gene

    Disorders for LINC01600 Gene

    Relevant External Links for LINC01600

    Atlas of Genetics and Cytogenetics in Oncology and Haematology:
    LINC01600
    genes like me logo Genes that share disorders with LINC01600: view

    No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01600 Gene

    Publications for LINC01600 Gene

    1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 67
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
    4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 67
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

    Products for LINC01600 Gene

    • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
    • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01600
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01600
      • Block miRNA regulation of LINC01600 using miScript Target Protectors

      Sources for LINC01600 Gene

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