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Aliases for LINC01600 Gene

Subcategory (RNA class) for LINC01600 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01600 Gene

  • Long Intergenic Non-Protein Coding RNA 1600 2 3 5
  • C6orf195 3 4
  • Chromosome 6 Open Reading Frame 195 2
  • BA145H9.2 3

External Ids for LINC01600 Gene

Previous HGNC Symbols for LINC01600 Gene

  • C6orf195

Summaries for LINC01600 Gene

GeneCards Summary for LINC01600 Gene

LINC01600 (Long Intergenic Non-Protein Coding RNA 1600) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01600 Gene

Genomics for LINC01600 Gene

Regulatory Elements for LINC01600 Gene

Enhancers for LINC01600 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G002541 1.6 FANTOM5 Ensembl ENCODE 11.2 +92.3 92265 1.8 PKNOX1 ATF1 ARNT TCF12 ZNF766 ELK1 GATA2 SP5 NCOA1 SREBF1 LOC105374885 LINC01600 SERPINB1 GC06P002544 GC06P002536
GH06G002629 1.6 Ensembl ENCODE dbSUPER 9.2 +2.7 2688 5.9 PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF143 FOS ZNF263 LINC01600 MYLK4 HMGN2P28 LOC105374885
GH06G002658 1.2 FANTOM5 ENCODE 11.3 -24.4 -24399 1.9 ELF3 RARA SLC30A9 RELB FOS IKZF2 CREM CEBPB MIER2 CEBPA LINC01600 LOC105374885 MYLK4 SERPINB9 SERPINB1 GC06M002657 GC06P002666
GH06G002684 1.2 FANTOM5 ENCODE 11.3 -49.2 -49208 0.2 TBP HDAC1 PKNOX1 ATF1 NFRKB SCRT2 CREM DEK SMARCC1 JUNB LINC01600 LOC105374885 SERPINB9 SERPINB1 NQO2 LOC105379664 GC06M002670
GH06G002610 0.6 dbSUPER 18 +23.6 23607 1.2 TBP CTCF PKNOX1 MAX RAD21 JUND PBX2 SMC3 FOS LINC01600 GC06M002614 GC06P002605
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01600 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01600 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000192092 564 601 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF143 FOS ZNF263 SP3

Genomic Location for LINC01600 Gene

Chromosome:
6
Start:
2,621,913 bp from pter
End:
2,635,064 bp from pter
Size:
13,152 bases
Orientation:
Minus strand

Genomic View for LINC01600 Gene

Genes around LINC01600 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01600 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01600 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01600 Gene

Proteins for LINC01600 Gene

  • Protein details for LINC01600 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96MT4-CF195_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01600
    Protein Accession:
    Q96MT4
    Secondary Accessions:
    • Q3SY08
    • Q3SY09
    • Q3SY10
    • Q5TAW4

    Protein attributes for LINC01600 Gene

    Size:
    127 amino acids
    Molecular mass:
    13896 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01600 Gene

Post-translational modifications for LINC01600 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC01600 Gene

Domains & Families for LINC01600 Gene

Protein Domains for LINC01600 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01600: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01600 Gene

Function for LINC01600 Gene

Phenotypes for LINC01600 Gene

GenomeRNAi human phenotypes for LINC01600:
genes like me logo Genes that share phenotypes with LINC01600: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01600 Gene

Localization for LINC01600 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01600 gene
Compartment Confidence
extracellular 2
nucleus 2
mitochondrion 1
peroxisome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01600 Gene

Pathways & Interactions for LINC01600 Gene

SuperPathways for LINC01600 Gene

No Data Available

Interacting Proteins for LINC01600 Gene

Selected Interacting proteins: Q96MT4-CF195_HUMAN for LINC01600 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for LINC01600 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01600 Gene

Drugs & Compounds for LINC01600 Gene

No Compound Related Data Available

Transcripts for LINC01600 Gene

mRNA/cDNA for LINC01600 Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01600 Gene

No ASD Table

Relevant External Links for LINC01600 Gene

GeneLoc Exon Structure for
LINC01600
ECgene alternative splicing isoforms for
LINC01600

Expression for LINC01600 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01600 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01600 Gene:

LINC01600
genes like me logo Genes that share expression patterns with LINC01600: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01600 Gene

Orthologs for LINC01600 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01600 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6H6orf195 34
  • 98.95 (n)
C6orf195 35
  • 98 (a)
OneToOne
Species where no ortholog for LINC01600 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01600 Gene

ENSEMBL:
Gene Tree for LINC01600 (if available)
TreeFam:
Gene Tree for LINC01600 (if available)

Paralogs for LINC01600 Gene

No data available for Paralogs for LINC01600 Gene

Variants for LINC01600 Gene

Sequence variations from dbSNP and Humsavar for LINC01600 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000276373 -- 2,626,211(+) CACTA(C/T)GCAAA intron-variant
rs1000428087 -- 2,626,437(+) TGCTA(A/G/T)CGACT intron-variant
rs1000689495 -- 2,622,089(+) CCAGT(A/G)AACAA nc-transcript-variant
rs1000737833 -- 2,622,399(+) ATCAC(A/G)CAGAT nc-transcript-variant
rs1001549125 -- 2,627,655(+) TGCAC(C/T)CCATG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LINC01600 Gene

Variant ID Type Subtype PubMed ID
esv1006170 CNV deletion 20482838
esv2759403 CNV loss 17122850
esv33977 CNV loss 17666407
esv3607900 CNV gain 21293372
esv3607912 CNV gain 21293372
nsv521282 CNV loss 19592680
nsv526731 CNV loss 19592680
nsv830574 CNV gain 17160897

Variation tolerance for LINC01600 Gene

Residual Variation Intolerance Score: 95.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.42; 63.87% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01600 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01600

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01600 Gene

Disorders for LINC01600 Gene

Relevant External Links for LINC01600

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01600

No disorders were found for LINC01600 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01600 Gene

Publications for LINC01600 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 3 4 64
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01600 Gene

Sources for LINC01600 Gene

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