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Aliases for LINC01599 Gene

Subcategory (RNA class) for LINC01599 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for LINC01599 Gene

  • Long Intergenic Non-Protein Coding RNA 1599 2 3
  • C14orf183 3 4
  • Chromosome 14 Open Reading Frame 183 2

External Ids for LINC01599 Gene

Previous HGNC Symbols for LINC01599 Gene

  • C14orf183

Summaries for LINC01599 Gene

GeneCards Summary for LINC01599 Gene

LINC01599 (Long Intergenic Non-Protein Coding RNA 1599) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01599 Gene

Genomics for LINC01599 Gene

Regulatory Elements for LINC01599 Gene

Enhancers for LINC01599 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LINC01599 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01599 Gene

Chromosome:
14
Start:
50,083,651 bp from pter
End:
50,092,643 bp from pter
Size:
8,993 bases
Orientation:
Minus strand

Genomic View for LINC01599 Gene

Genes around LINC01599 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01599 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01599 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01599 Gene

Proteins for LINC01599 Gene

  • Protein details for LINC01599 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WXQ3-CN183_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01599
    Protein Accession:
    Q8WXQ3

    Protein attributes for LINC01599 Gene

    Size:
    324 amino acids
    Molecular mass:
    35482 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01599 Gene

Proteomics data for LINC01599 Gene at MOPED

Post-translational modifications for LINC01599 Gene

No Post-translational modifications

Other Protein References for LINC01599 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LINC01599 Gene

Domains & Families for LINC01599 Gene

Protein Domains for LINC01599 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01599: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01599 Gene

Function for LINC01599 Gene

Phenotypes for LINC01599 Gene

GenomeRNAi human phenotypes for LINC01599:
genes like me logo Genes that share phenotypes with LINC01599: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01599 Gene

Localization for LINC01599 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01599 Gene

Pathways & Interactions for LINC01599 Gene

SuperPathways for LINC01599 Gene

No Data Available

Interacting Proteins for LINC01599 Gene

Gene Ontology (GO) - Biological Process for LINC01599 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01599 Gene

Drugs & Compounds for LINC01599 Gene

No Compound Related Data Available

Expression for LINC01599 Gene

mRNA expression in normal human tissues for LINC01599 Gene

genes like me logo Genes that share expression patterns with LINC01599: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC01599 Gene

Orthologs for LINC01599 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01599 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C14H14orf183 35
  • 99.07 (n)
  • 98.77 (a)
Species with no ortholog for LINC01599:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for LINC01599 Gene

Paralogs for LINC01599 Gene

No data available for Paralogs for LINC01599 Gene

Variants for LINC01599 Gene

Sequence variations from dbSNP and Humsavar for LINC01599 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs7141328 -- 50,100,411(+) GGAAG(C/T)ATCAA intron-variant
rs7141332 -- 50,093,684(+) AGATC(G/T)TCATC upstream-variant-2KB
rs7141809 -- 50,094,227(+) CTTTA(A/G)GATCA upstream-variant-2KB
rs7494668 -- 50,091,455(+) CAGCG(C/T)AGTGT intron-variant
rs7142392 -- 50,100,949(+) GGCGA(C/T)TGGAT intron-variant

Variation tolerance for LINC01599 Gene

Residual Variation Intolerance Score: 85.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.29; 40.96% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01599 Gene

HapMap Linkage Disequilibrium report
LINC01599

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01599 Gene

Disorders for LINC01599 Gene

Relevant External Links for LINC01599

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01599

No disorders were found for LINC01599 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01599 Gene

Publications for LINC01599 Gene

  1. A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. (PMID: 19490893) Luo J. … Elledge S.J. (Cell 2009) 3 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LINC01599 Gene

Sources for LINC01599 Gene

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