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Aliases for LINC01590 Gene

Subcategory (RNA class) for LINC01590 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01590 Gene

  • Long Intergenic Non-Protein Coding RNA 1590 2 3 4
  • C6orf164 3 4
  • Chromosome 6 Open Reading Frame 164 2
  • DJ102H19.4 3

External Ids for LINC01590 Gene

Previous HGNC Symbols for LINC01590 Gene

  • C6orf164

Summaries for LINC01590 Gene

GeneCards Summary for LINC01590 Gene

LINC01590 (Long Intergenic Non-Protein Coding RNA 1590) is an RNA Gene, and is affiliated with the non-coding RNA class. An important paralog of this gene is ENSG00000226524.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01590 Gene

Genomics for LINC01590 Gene

Genomic Location for LINC01590 Gene

Start:
87,397,124 bp from pter
End:
87,399,741 bp from pter
Size:
2,618 bases
Orientation:
Plus strand

Genomic View for LINC01590 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01590 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01590 Gene

No data available for Regulatory Elements for LINC01590 Gene

Proteins for LINC01590 Gene

  • Protein details for LINC01590 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TEZ4-CF164_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01590
    Protein Accession:
    Q5TEZ4
    Secondary Accessions:
    • A6NM89

    Protein attributes for LINC01590 Gene

    Size:
    76 amino acids
    Molecular mass:
    8388 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAB71117.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for LINC01590 Gene

Proteomics data for LINC01590 Gene at MOPED

Post-translational modifications for LINC01590 Gene

No Post-translational modifications

Other Protein References for LINC01590 Gene

No data available for DME Specific Peptides for LINC01590 Gene

Domains for LINC01590 Gene

Protein Domains for LINC01590 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01590: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01590 Gene

Function for LINC01590 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01590 Gene

Localization for LINC01590 Gene

Gene Ontology (GO) - Cellular Components for LINC01590 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with LINC01590: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for LINC01590 Gene

Pathways for LINC01590 Gene

SuperPathways for LINC01590 Gene

No Data Available

Interacting Proteins for LINC01590 Gene

Gene Ontology (GO) - Biological Process for LINC01590 Gene

None

No data available for Pathways by source for LINC01590 Gene

Transcripts for LINC01590 Gene

mRNA/cDNA for LINC01590 Gene

(1) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01590
    • Block miRNA regulation of LINC01590 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01590

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LINC01590 Gene

    No ASD Table

    Relevant External Links for LINC01590 Gene

    GeneLoc Exon Structure for
    LINC01590
    ECgene alternative splicing isoforms for
    LINC01590

    Expression for LINC01590 Gene

    mRNA expression in normal human tissues for LINC01590 Gene

    genes like me logo Genes that share expressions with LINC01590: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for LINC01590 Gene

    Orthologs for LINC01590 Gene

    This gene was present in the common ancestor of chordates.

    Orthologs for LINC01590 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia -- 36
    • 98 (a)
    OneToMany
    cow
    (Bos Taurus)
    Mammalia SMIM8 36
    • 91 (a)
    OneToMany
    dog
    (Canis familiaris)
    Mammalia -- 36
    • 74 (a)
    OneToMany
    mouse
    (Mus musculus)
    Mammalia Smim8 36
    • 89 (a)
    OneToMany
    oppossum
    (Monodelphis domestica)
    Mammalia -- 36
    • 84 (a)
    OneToMany
    platypus
    (Ornithorhynchus anatinus)
    Mammalia -- 36
    • 70 (a)
    OneToMany
    chicken
    (Gallus gallus)
    Aves C6ORF162 36
    • 77 (a)
    OneToMany
    lizard
    (Anolis carolinensis)
    Reptilia -- 36
    • 78 (a)
    OneToMany
    zebrafish
    (Danio rerio)
    Actinopterygii smim8 36
    • 61 (a)
    OneToMany
    Species with no ortholog for LINC01590:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)

    Evolution for LINC01590 Gene

    ENSEMBL:
    Gene Tree for LINC01590 (if available)
    TreeFam:
    Gene Tree for LINC01590 (if available)

    Paralogs for LINC01590 Gene

    Paralogs for LINC01590 Gene

    genes like me logo Genes that share paralogs with LINC01590: view

    Variants for LINC01590 Gene

    Sequence variations from dbSNP and Humsavar for LINC01590 Gene

    SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
    rs926946 -- 87,398,052(+) CTAGA(C/T)ATCTC nc-transcript-variant
    rs1051550 -- 87,399,586(+) GGGGT(A/G)GGTTG nc-transcript-variant
    rs4707372 -- 87,395,280(+) aacac(A/G)tatgt upstream-variant-2KB
    rs6454609 -- 87,396,310(+) TCCAC(C/T)GTTAT upstream-variant-2KB
    rs6454610 -- 87,396,311(+) CCACT(A/G)TTATT upstream-variant-2KB

    Relevant External Links for LINC01590 Gene

    HapMap Linkage Disequilibrium report
    LINC01590

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01590 Gene

    Disorders for LINC01590 Gene

    No disorders were found for LINC01590 Gene.

    No data available for UniProtKB/Swiss-Prot for LINC01590 Gene

    Publications for LINC01590 Gene

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
    2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for LINC01590 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01590
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01590
      • Block miRNA regulation of LINC01590 using miScript Target Protectors

      Sources for LINC01590 Gene

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