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Aliases for LINC01590 Gene

Subcategory (RNA class) for LINC01590 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01590 Gene

  • Long Intergenic Non-Protein Coding RNA 1590 2 3 4
  • C6orf164 3 4
  • Chromosome 6 Open Reading Frame 164 2
  • DJ102H19.4 3

External Ids for LINC01590 Gene

Previous HGNC Symbols for LINC01590 Gene

  • C6orf164

Previous GeneCards Identifiers for LINC01590 Gene

  • GC06P087397

Summaries for LINC01590 Gene

GeneCards Summary for LINC01590 Gene

LINC01590 (Long Intergenic Non-Protein Coding RNA 1590) is an RNA Gene, and is affiliated with the non-coding RNA class. An important paralog of this gene is LINC01590.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01590 Gene

Genomics for LINC01590 Gene

Genomic Location for LINC01590 Gene

87,322,583 bp from pter
87,399,749 bp from pter
77,167 bases
Plus strand

Genomic View for LINC01590 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01590 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01590 Gene

No data available for Regulatory Elements for LINC01590 Gene

Proteins for LINC01590 Gene

  • Protein details for LINC01590 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC01590
    Protein Accession:
    Secondary Accessions:
    • A6NM89

    Protein attributes for LINC01590 Gene

    76 amino acids
    Molecular mass:
    8388 Da
    Quaternary structure:
    No Data Available
    • Sequence=CAB71117.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for LINC01590 Gene

Proteomics data for LINC01590 Gene at MOPED

Post-translational modifications for LINC01590 Gene

No Post-translational modifications

Other Protein References for LINC01590 Gene

No data available for DME Specific Peptides for LINC01590 Gene

Domains & Families for LINC01590 Gene

Protein Domains for LINC01590 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01590: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01590 Gene

Function for LINC01590 Gene

Phenotypes for LINC01590 Gene

GenomeRNAi human phenotypes for LINC01590:
genes like me logo Genes that share phenotypes with LINC01590: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01590 Gene

Localization for LINC01590 Gene

Gene Ontology (GO) - Cellular Components for LINC01590 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with LINC01590: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for LINC01590 Gene

Pathways & Interactions for LINC01590 Gene

SuperPathways for LINC01590 Gene

No Data Available

Interacting Proteins for LINC01590 Gene

Gene Ontology (GO) - Biological Process for LINC01590 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01590 Gene

Drugs & Compounds for LINC01590 Gene

No Compound Related Data Available

Transcripts for LINC01590 Gene

mRNA/cDNA for LINC01590 Gene

(1) REFSEQ mRNAs :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01590 Gene

No ASD Table

Relevant External Links for LINC01590 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01590 Gene

mRNA expression in normal human tissues for LINC01590 Gene

genes like me logo Genes that share expression patterns with LINC01590: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC01590 Gene

Orthologs for LINC01590 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LINC01590 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SMIM8 36
  • 91 (a)
(Canis familiaris)
Mammalia -- 36
  • 74 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 84 (a)
(Mus musculus)
Mammalia Smim8 36
  • 89 (a)
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 70 (a)
(Pan troglodytes)
Mammalia -- 36
  • 98 (a)
(Gallus gallus)
Aves C6ORF162 36
  • 77 (a)
(Anolis carolinensis)
Reptilia -- 36
  • 78 (a)
(Danio rerio)
Actinopterygii smim8 36
  • 61 (a)
Species with no ortholog for LINC01590:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LINC01590 Gene

Gene Tree for LINC01590 (if available)
Gene Tree for LINC01590 (if available)

Paralogs for LINC01590 Gene

Paralogs for LINC01590 Gene

genes like me logo Genes that share paralogs with LINC01590: view

Variants for LINC01590 Gene

Sequence variations from dbSNP and Humsavar for LINC01590 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs926946 -- 87,398,052(+) CTAGA(C/T)ATCTC nc-transcript-variant
rs1051550 -- 87,399,586(+) GGGGT(A/G)GGTTG nc-transcript-variant
rs4707372 -- 87,395,280(+) aacac(A/G)tatgt upstream-variant-2KB
rs6454609 -- 87,396,310(+) TCCAC(C/T)GTTAT upstream-variant-2KB
rs6454610 -- 87,396,311(+) CCACT(A/G)TTATT upstream-variant-2KB

Variation tolerance for LINC01590 Gene

Gene Damage Index Score: 0.20; 4.43% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01590 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01590 Gene

Disorders for LINC01590 Gene

Relevant External Links for LINC01590

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with LINC01590: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01590 Gene

Publications for LINC01590 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 67
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for LINC01590 Gene

Sources for LINC01590 Gene

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