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Aliases for LINC01588 Gene

Subcategory (RNA class) for LINC01588 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01588 Gene

  • Long Intergenic Non-Protein Coding RNA 1588 2 3
  • C14orf182 3 4
  • Chromosome 14 Open Reading Frame 182 2

External Ids for LINC01588 Gene

Previous Symbols for LINC01588 Gene

  • C14orf182

Summaries for LINC01588 Gene

GeneCards Summary for LINC01588 Gene

LINC01588 (Long Intergenic Non-Protein Coding RNA 1588) is a RNA Gene, and belongs to non-coding RNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01588 Gene

Genomics for LINC01588 Gene

Genomic Location for LINC01588 Gene

Start:
49,981,712 bp from pter
End:
50,007,520 bp from pter
Size:
25,809 bases
Orientation:
Minus strand

Genomic View for LINC01588 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01588 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01588 Gene

No data available for Regulatory Elements for LINC01588 Gene

Proteins for LINC01588 Gene

  • Protein details for LINC01588 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A1A4T8-CN182_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01588
    Protein Accession:
    A1A4T8
    Secondary Accessions:
    • A8MYX4

    Protein attributes for LINC01588 Gene

    Size:
    154 amino acids
    Molecular mass:
    17448 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LINC01588 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC01588 Gene

Proteomics data for LINC01588 Gene at MOPED

Post-translational modifications for LINC01588 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01588 Gene

Domains for LINC01588 Gene

Protein Domains for LINC01588 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with LINC01588: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LINC01588 Gene

Function for LINC01588 Gene

Gene Ontology (GO) - Molecular Function for LINC01588 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LINC01588: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01588 Gene

Localization for LINC01588 Gene

No data available for Gene Ontology (GO) - Cellular Components for LINC01588 Gene

Pathways for LINC01588 Gene

SuperPathways for LINC01588 Gene

No Data Available

Interacting Proteins for LINC01588 Gene

Selected Interacting proteins: A1A4T8-CN182_HUMAN for LINC01588 Gene via UniProtKB

Gene Ontology (GO) - Biological Process for LINC01588 Gene

None

No data available for Pathways by source for LINC01588 Gene

Transcripts for LINC01588 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01588 Gene

No ASD Table

Relevant External Links for LINC01588 Gene

GeneLoc Exon Structure for
LINC01588
ECgene alternative splicing isoforms for
LINC01588

Expression for LINC01588 Gene

mRNA expression in normal human tissues for LINC01588 Gene

genes like me logo Genes that share expressions with LINC01588: view

Orthologs for LINC01588 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01588 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C14orf182 37
  • 97 (a)
OneToOne
Species with no ortholog for LINC01588:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01588 Gene

ENSEMBL:
Gene Tree for LINC01588 (if available)
TreeFam:
Gene Tree for LINC01588 (if available)

Paralogs for LINC01588 Gene

No data available for Paralogs for LINC01588 Gene

Variants for LINC01588 Gene

Sequence variations from dbSNP and Humsavar for LINC01588 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs941608 -- 49,989,910(+) AATTG(G/T)TTTTT intron-variant
rs941609 -- 49,990,011(+) TGTTT(C/G)TGCCT intron-variant
rs1956227 -- 50,002,534(+) GGGCA(A/C)AGGAG intron-variant
rs2355654 -- 49,988,369(+) CAGAA(C/T)GCTAT intron-variant
rs3742468 -- 50,000,650(-) GCAGC(C/T)GTGCT intron-variant

Relevant External Links for LINC01588 Gene

HapMap Linkage Disequilibrium report
LINC01588

No data available for Structural Variations from Database of Genomic Variants (DGV) for LINC01588 Gene

Disorders for LINC01588 Gene

No disorders were found for LINC01588 Gene.

No data available for UniProtKB/Swiss-Prot for LINC01588 Gene

Publications for LINC01588 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for LINC01588 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01588
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01588
    • Block miRNA regulation of LINC01588 using miScript Target Protectors

    Sources for LINC01588 Gene

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