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Aliases for LINC01587 Gene

Subcategory (RNA class) for LINC01587 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01587 Gene

  • Long Intergenic Non-Protein Coding RNA 1587 2 3
  • C4orf6 3 4
  • AC1 3 4
  • Chromosome 4 Open Reading Frame 6 2
  • Expressed In Neuroblastoma 3
  • Protein AC1 4

External Ids for LINC01587 Gene

Previous Symbols for LINC01587 Gene

  • C4orf6

Summaries for LINC01587 Gene

Entrez Gene Summary for LINC01587 Gene

  • This gene is expressed in neuroblastoma; however, the function of this gene is not yet determined. [provided by RefSeq, Jul 2008]

GeneCards Summary for LINC01587 Gene

LINC01587 (Long Intergenic Non-Protein Coding RNA 1587) is a RNA Gene, and belongs to non-coding RNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01587 Gene

Genomics for LINC01587 Gene

Genomic Location for LINC01587 Gene

Start:
5,524,569 bp from pter
End:
5,527,801 bp from pter
Size:
3,233 bases
Orientation:
Plus strand

Genomic View for LINC01587 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01587 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01587 Gene

No data available for Regulatory Elements for LINC01587 Gene

Proteins for LINC01587 Gene

  • Protein details for LINC01587 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q99440-CD006_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01587
    Protein Accession:
    Q99440
    Secondary Accessions:
    • Q17R65

    Protein attributes for LINC01587 Gene

    Size:
    93 amino acids
    Molecular mass:
    10499 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01587 Gene

Proteomics data for LINC01587 Gene at MOPED

Post-translational modifications for LINC01587 Gene

No Post-translational modifications

Other Protein References for LINC01587 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for LINC01587 Gene

Domains for LINC01587 Gene

Protein Domains for LINC01587 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01587: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LINC01587 Gene

Function for LINC01587 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01587 Gene

Localization for LINC01587 Gene

No data available for Gene Ontology (GO) - Cellular Components for LINC01587 Gene

Pathways for LINC01587 Gene

SuperPathways for LINC01587 Gene

No Data Available

Interacting Proteins for LINC01587 Gene

Gene Ontology (GO) - Biological Process for LINC01587 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007399 nervous system development TAS 9016955
genes like me logo Genes that share ontologies with LINC01587: view

No data available for Pathways by source for LINC01587 Gene

Transcripts for LINC01587 Gene

mRNA/cDNA for LINC01587 Gene

(1) REFSEQ mRNAs :
(11) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01587 Gene

No ASD Table

Relevant External Links for LINC01587 Gene

GeneLoc Exon Structure for
LINC01587
ECgene alternative splicing isoforms for
LINC01587

Expression for LINC01587 Gene

mRNA expression in normal human tissues for LINC01587 Gene

mRNA Expression by UniProt/SwissProt for LINC01587 Gene

Q99440-CD006_HUMAN
Tissue specificity: Expressed in neuroblastoma
genes like me logo Genes that share expressions with LINC01587: view

Orthologs for LINC01587 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01587 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C4H4orf6 36
  • 99.28 (n)
  • 97.83 (a)
Species with no ortholog for LINC01587:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01587 Gene

ENSEMBL:
Gene Tree for LINC01587 (if available)
TreeFam:
Gene Tree for LINC01587 (if available)

Paralogs for LINC01587 Gene

No data available for Paralogs for LINC01587 Gene

Variants for LINC01587 Gene

Sequence variations from dbSNP and Humsavar for LINC01587 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs886532 -- 5,525,375(-) AATTG(G/T)TTCTT missense, reference
rs1059157 -- 5,526,298(+) ACTGT(C/G)TCCGG reference, synonymous-codon
rs1059158 -- 5,527,506(+) ACATG(A/T)CGAAA utr-variant-3-prime
rs1059159 -- 5,527,507(+) CATGA(C/T)GAAAA utr-variant-3-prime
rs2267654 -- 5,525,522(-) ATAAA(C/T)GATGG intron-variant

Relevant External Links for LINC01587 Gene

HapMap Linkage Disequilibrium report
LINC01587

No data available for Structural Variations from Database of Genomic Variants (DGV) for LINC01587 Gene

Disorders for LINC01587 Gene

No disorders were found for LINC01587 Gene.

No data available for UniProtKB/Swiss-Prot for LINC01587 Gene

Publications for LINC01587 Gene

  1. Fluorescent differential display analysis of gene expression in differentiating neuroblastoma cells. (PMID: 9016955) Kito K. … Sakaki Y. (Gene 1997) 2 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Long interspersed nuclear element-1 (LINE1)-mediated deletion of EVC, EVC2, C4orf6, and STK32B in Ellis-van Creveld syndrome with borderline intelligence. (PMID: 18454448) Temtamy S.A. … Ruiz-Perez V.L. (Hum. Mutat. 2008) 3
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LINC01587 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01587
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01587
    • Block miRNA regulation of LINC01587 using miScript Target Protectors

    Sources for LINC01587 Gene

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