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Aliases for LINC01565 Gene

Subcategory (RNA class) for LINC01565 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01565 Gene

  • Long Intergenic Non-Protein Coding RNA 1565 2 3
  • C3orf27 3 4
  • GR6 3 4
  • Chromosome 3 Open Reading Frame 27 2
  • Putative GR6 Protein 3

External Ids for LINC01565 Gene

Previous HGNC Symbols for LINC01565 Gene

  • C3orf27

Summaries for LINC01565 Gene

GeneCards Summary for LINC01565 Gene

LINC01565 (Long Intergenic Non-Protein Coding RNA 1565) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01565 Gene

Genomics for LINC01565 Gene

Genomic Location for LINC01565 Gene

Start:
128,572,000 bp from pter
End:
128,576,086 bp from pter
Size:
4,087 bases
Orientation:
Minus strand

Genomic View for LINC01565 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01565 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01565 Gene

No data available for Regulatory Elements for LINC01565 Gene

Proteins for LINC01565 Gene

  • Protein details for LINC01565 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15544-GR6_HUMAN
    Recommended name:
    Protein GR6
    Protein Accession:
    O15544
    Secondary Accessions:

    Protein attributes for LINC01565 Gene

    Size:
    149 amino acids
    Molecular mass:
    16056 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01565 Gene

Proteomics data for LINC01565 Gene at MOPED

Post-translational modifications for LINC01565 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for LINC01565 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for LINC01565 Gene

Domains for LINC01565 Gene

Protein Domains for LINC01565 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01565: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01565 Gene

Function for LINC01565 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01565 Gene

Localization for LINC01565 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01565 Gene

Pathways for LINC01565 Gene

SuperPathways for LINC01565 Gene

No Data Available

Interacting Proteins for LINC01565 Gene

Gene Ontology (GO) - Biological Process for LINC01565 Gene

None

No data available for Pathways by source for LINC01565 Gene

Transcripts for LINC01565 Gene

mRNA/cDNA for LINC01565 Gene

(2) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01565 Gene

No ASD Table

Relevant External Links for LINC01565 Gene

GeneLoc Exon Structure for
LINC01565
ECgene alternative splicing isoforms for
LINC01565

Expression for LINC01565 Gene

mRNA expression in normal human tissues for LINC01565 Gene

mRNA Expression by UniProt/SwissProt for LINC01565 Gene

O15544-GR6_HUMAN
Tissue specificity: Expressed in fetus (aged from 7 to 8 weeks). Weakly expressed in lymphocytes.
genes like me logo Genes that share expressions with LINC01565: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein expression for LINC01565 Gene

Orthologs for LINC01565 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01565 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3H3orf27 35
  • 98.66 (n)
  • 99.33 (a)
C3orf27 36
  • 99 (a)
OneToOne
Species with no ortholog for LINC01565:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01565 Gene

ENSEMBL:
Gene Tree for LINC01565 (if available)
TreeFam:
Gene Tree for LINC01565 (if available)

Paralogs for LINC01565 Gene

No data available for Paralogs for LINC01565 Gene

Variants for LINC01565 Gene

Sequence variations from dbSNP and Humsavar for LINC01565 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs7652010 -- 128,576,740(+) CCATG(A/C/G)CTTGA upstream-variant-2KB
rs191942558 -- 128,573,472(+) AGCTC(A/C/G)TCATC reference, missense, synonymous-codon, nc-transcript-variant
rs553438569 -- 128,576,424(+) AGCTG(A/G)TGGAT upstream-variant-2KB

Relevant External Links for LINC01565 Gene

HapMap Linkage Disequilibrium report
LINC01565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01565 Gene

Disorders for LINC01565 Gene

No disorders were found for LINC01565 Gene.

No data available for UniProtKB/Swiss-Prot for LINC01565 Gene

Publications for LINC01565 Gene

  1. Activation of a novel gene in 3q21 and identification of intergenic fusion transcripts with ecotropic viral insertion site I in leukemia. (PMID: 9307271) Pekarsky Y. … Gardiner K. (Cancer Res. 1997) 2 3 4
  2. [Structural features of GR6 gene and its expression in colorectal neoplasm]. (PMID: 15067727) Lin J. … Lai M.D. (Zhejiang Da Xue Xue Bao Yi Xue Ban 2004) 3 23
  3. Multiple loci are associated with white blood cell phenotypes. (PMID: 21738480) Nalls M.A. … Ganesh S.K. (PLoS Genet. 2011) 3
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4

Products for LINC01565 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01565
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01565
    • Block miRNA regulation of LINC01565 using miScript Target Protectors

    Sources for LINC01565 Gene

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