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Aliases for LINC01565 Gene

Subcategory (RNA class) for LINC01565 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01565 Gene

  • Long Intergenic Non-Protein Coding RNA 1565 2 3 5
  • C3orf27 3 4
  • GR6 3 4
  • Chromosome 3 Open Reading Frame 27 2
  • Putative GR6 Protein 3

External Ids for LINC01565 Gene

Previous HGNC Symbols for LINC01565 Gene

  • C3orf27

Summaries for LINC01565 Gene

GeneCards Summary for LINC01565 Gene

LINC01565 (Long Intergenic Non-Protein Coding RNA 1565) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01565 Gene

Genomics for LINC01565 Gene

Regulatory Elements for LINC01565 Gene

Enhancers for LINC01565 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G128431 2 FANTOM5 Ensembl ENCODE dbSUPER 11.2 +141.9 141876 4.7 PKNOX1 FOXA2 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 DNAJB8-AS1 ISY1 ENSG00000244932 DNAJB8 EEFSEC H1FX RPL32P3 LINC01565 H1FX-AS1 RUVBL1
GH03G128496 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.6 +78.8 78826 2.2 HDGF AGO1 SIN3A ZNF48 YY1 TCF12 GATA2 ZNF263 ZHX2 REST DNAJB8 GATA2 DNAJB8-AS1 LINC01565 GATA2-AS1 TMED10P2 ABTB1 EEFSEC LOC90246
GH03G128547 1.3 Ensembl ENCODE 13 +27.3 27266 3.4 HDGF PKNOX1 ATF1 CREB3L1 ZNF133 YY1 TCF12 FOS KLF13 JUNB LINC01565 DNAJB8 DNAJB8-AS1 RPN1 TMED10P2
GH03G128503 1.2 ENCODE dbSUPER 11.9 +70.3 70348 3.7 PKNOX1 CBX3 RAD21 EGR1 ZNF143 RCOR1 FOS HCFC1 NFYA CEBPB LINC01565 DNAJB8 DNAJB8-AS1 ACAD9 GATA2-AS1 TMED10P2 LOC90246 GATA2
GH03G128395 1 Ensembl ENCODE dbSUPER 10.3 +180.5 180533 0.9 POLR2A REST ZNF592 DNAJB8-AS1 DNAJB8 LINC01565 RNU6-823P EEFSEC GC03P128380 GC03M128409
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01565 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01565 Gene

Chromosome:
3
Start:
128,572,000 bp from pter
End:
128,576,086 bp from pter
Size:
4,087 bases
Orientation:
Minus strand

Genomic View for LINC01565 Gene

Genes around LINC01565 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01565 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01565 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01565 Gene

Proteins for LINC01565 Gene

  • Protein details for LINC01565 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15544-GR6_HUMAN
    Recommended name:
    Protein GR6
    Protein Accession:
    O15544

    Protein attributes for LINC01565 Gene

    Size:
    149 amino acids
    Molecular mass:
    16056 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01565 Gene

Post-translational modifications for LINC01565 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC01565 Gene

Domains & Families for LINC01565 Gene

Protein Domains for LINC01565 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LINC01565 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01565: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LINC01565 Gene

Function for LINC01565 Gene

Phenotypes for LINC01565 Gene

genes like me logo Genes that share phenotypes with LINC01565: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01565 Gene

Localization for LINC01565 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01565 gene
Compartment Confidence
extracellular 2
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01565 Gene

Pathways & Interactions for LINC01565 Gene

SuperPathways for LINC01565 Gene

No Data Available

Interacting Proteins for LINC01565 Gene

Selected Interacting proteins: O15544-GR6_HUMAN for LINC01565 Gene via IID

Gene Ontology (GO) - Biological Process for LINC01565 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01565 Gene

Drugs & Compounds for LINC01565 Gene

No Compound Related Data Available

Transcripts for LINC01565 Gene

mRNA/cDNA for LINC01565 Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01565 Gene

No ASD Table

Relevant External Links for LINC01565 Gene

GeneLoc Exon Structure for
LINC01565
ECgene alternative splicing isoforms for
LINC01565

Expression for LINC01565 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01565 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01565 Gene:

LINC01565

mRNA Expression by UniProt/SwissProt for LINC01565 Gene:

O15544-GR6_HUMAN
Tissue specificity: Expressed in fetus (aged from 7 to 8 weeks). Weakly expressed in lymphocytes.
genes like me logo Genes that share expression patterns with LINC01565: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01565 Gene

Orthologs for LINC01565 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01565 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C3orf27 35
  • 99 (a)
OneToOne
C3H3orf27 34
  • 98.66 (n)
Species where no ortholog for LINC01565 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01565 Gene

ENSEMBL:
Gene Tree for LINC01565 (if available)
TreeFam:
Gene Tree for LINC01565 (if available)

Paralogs for LINC01565 Gene

No data available for Paralogs for LINC01565 Gene

Variants for LINC01565 Gene

Sequence variations from dbSNP and Humsavar for LINC01565 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000133185 -- 128,575,156(+) AGGAG(A/G)CTGAG intron-variant
rs1000513678 -- 128,571,868(+) TGATC(C/T)GCCCG downstream-variant-500B
rs1001640698 -- 128,572,829(+) TCTCA(A/C)AGAAA nc-transcript-variant
rs1002029596 -- 128,577,876(+) GAGAC(A/G)TCAGC upstream-variant-2KB
rs1002485526 -- 128,572,440(+) GCCGA(C/G)TTCAC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01565 Gene

Variant ID Type Subtype PubMed ID
esv2759176 CNV loss 17122850

Variation tolerance for LINC01565 Gene

Residual Variation Intolerance Score: 69.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.42; 9.18% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01565 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01565 Gene

Disorders for LINC01565 Gene

Relevant External Links for LINC01565

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01565

No disorders were found for LINC01565 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01565 Gene

Publications for LINC01565 Gene

  1. Activation of a novel gene in 3q21 and identification of intergenic fusion transcripts with ecotropic viral insertion site I in leukemia. (PMID: 9307271) Pekarsky Y. … Gardiner K. (Cancer Res. 1997) 2 3 4 64
  2. [Structural features of GR6 gene and its expression in colorectal neoplasm]. (PMID: 15067727) Lin J. … Lai M.D. (Zhejiang Da Xue Xue Bao Yi Xue Ban 2004) 3 22 64
  3. Multiple loci are associated with white blood cell phenotypes. (PMID: 21738480) Nalls M.A. … Ganesh S.K. (PLoS Genet. 2011) 3 64
  4. The DNA sequence, annotation and analysis of human chromosome 3. (PMID: 16641997) Muzny D.M. … Gibbs R.A. (Nature 2006) 4 64

Products for LINC01565 Gene

Sources for LINC01565 Gene

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