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Aliases for LINC01563 Gene

Subcategory (RNA class) for LINC01563 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01563 Gene

  • Long Intergenic Non-Protein Coding RNA 1563 2 3 5
  • HP08942 3

External Ids for LINC01563 Gene

Previous GeneCards Identifiers for LINC01563 Gene

  • GC17P021716
  • GC17P022304
  • GC17P022733
  • GC17P023065
  • GC17P023353

Summaries for LINC01563 Gene

GeneCards Summary for LINC01563 Gene

LINC01563 (Long Intergenic Non-Protein Coding RNA 1563) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01563 Gene

Genomics for LINC01563 Gene

Regulatory Elements for LINC01563 Gene

Enhancers for LINC01563 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G021075 0.6 ENCODE 11.1 +0.2 169 1.2 ZNF639 SMARCE1 RNF2 ZEB2 FOSL1 ZNF589 GATA3 GATA2 POLR2A IKZF1 USP22 LINC01563 CCDC144NL-AS1 DHRS7B
GH17G021098 1.6 FANTOM5 Ensembl ENCODE 0.3 +23.8 23799 1.7 HDGF PKNOX1 ATF1 CREB3L1 ARNT ARID4B E2F7 SIN3A FEZF1 ZNF2 KCNJ18 LINC01563 DHRS7B
GH17G021051 1.2 Ensembl ENCODE dbSUPER 0.3 -23.4 -23362 1.6 HDAC1 HMG20B L3MBTL2 HLF CEBPB CEBPG YY1 HDAC2 ATF3 ZNF26 CCDC144NL-AS1 USP22 DHRS7B LINC01563
GH17G021072 0.5 ENCODE 0.7 -2.6 -2583 0.8 NFE2 PRDM10 ATF2 USP22 MEIS3P2 LINC01563
GH17G021119 1 Ensembl ENCODE 0.3 +44.1 44148 0.6 CTCF ATF1 SAP130 MAX ZNF2 RAD21 TEAD3 GATA3 ZNF366 SCRT2 TMEM11 DHRS7B LINC01563
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01563 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01563 Gene

Chromosome:
17
Start:
21,075,556 bp from pter
End:
21,090,615 bp from pter
Size:
15,060 bases
Orientation:
Plus strand

Genomic View for LINC01563 Gene

Genes around LINC01563 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01563 Gene

Proteins for LINC01563 Gene

Post-translational modifications for LINC01563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01563 Gene

Domains & Families for LINC01563 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01563 Gene

Function for LINC01563 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01563 Gene

Localization for LINC01563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01563 Gene

Pathways & Interactions for LINC01563 Gene

SuperPathways for LINC01563 Gene

No Data Available

Interacting Proteins for LINC01563 Gene

Gene Ontology (GO) - Biological Process for LINC01563 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01563 Gene

Transcripts for LINC01563 Gene

mRNA/cDNA for LINC01563 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01563 Gene

No ASD Table

Relevant External Links for LINC01563 Gene

GeneLoc Exon Structure for
LINC01563
ECgene alternative splicing isoforms for
LINC01563

Expression for LINC01563 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01563 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01563 Gene:

LINC01563
genes like me logo Genes that share expression patterns with LINC01563: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01563 Gene

Orthologs for LINC01563 Gene

Evolution for LINC01563 Gene

ENSEMBL:
Gene Tree for LINC01563 (if available)
TreeFam:
Gene Tree for LINC01563 (if available)

No data available for Orthologs for LINC01563 Gene

Paralogs for LINC01563 Gene

No data available for Paralogs for LINC01563 Gene

Variants for LINC01563 Gene

Sequence variations from dbSNP and Humsavar for LINC01563 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000159086 -- 21,083,635(+) CCTGG(A/G)TAGCT intron-variant
rs1000262795 -- 21,077,510(+) TTTGA(C/T)GACAA intron-variant
rs1000359281 -- 21,087,763(+) ATGGT(C/G)GTCTA intron-variant
rs1000506564 -- 21,075,495(+) CATGT(G/T)GTCTG upstream-variant-2KB
rs1000986956 -- 21,090,802(+) TTTCC(A/G)ACCAT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for LINC01563 Gene

Variant ID Type Subtype PubMed ID
esv1007487 CNV insertion 20482838
nsv1059146 CNV gain 25217958
nsv1078306 OTHER inversion 25765185
nsv1142899 CNV tandem duplication 24896259

Relevant External Links for LINC01563 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01563

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01563 Gene

Disorders for LINC01563 Gene

Relevant External Links for LINC01563

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01563

No disorders were found for LINC01563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01563 Gene

Publications for LINC01563 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M. … Kato S. (Invest. Ophthalmol. Vis. Sci. 2011) 3 64

Products for LINC01563 Gene

Sources for LINC01563 Gene

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