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Aliases for LINC01561 Gene

Subcategory (RNA class) for LINC01561 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01561 Gene

  • Long Intergenic Non-Protein Coding RNA 1561 2 3 5
  • C10orf85 3 4
  • Chromosome 10 Open Reading Frame 85 2

External Ids for LINC01561 Gene

Previous HGNC Symbols for LINC01561 Gene

  • C10orf85

Summaries for LINC01561 Gene

GeneCards Summary for LINC01561 Gene

LINC01561 (Long Intergenic Non-Protein Coding RNA 1561) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01561 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01561 Gene

Genomics for LINC01561 Gene

Regulatory Elements for LINC01561 Gene

Enhancers for LINC01561 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H120503 0.7 ENCODE 14.8 -91.2 -91191 5 KLF1 KLF17 FEZF1 ZIC2 GLIS2 POLR2A ZBTB48 SCRT2 FOS ZBTB20 LINC01561 PLPP4 PIR43908
GH10H120641 0.4 ENCODE 10.7 +44.0 44006 1 JUN RCOR1 LINC01561 LOC105378516
GH10H120683 0.2 ENCODE 10.6 +86.7 86736 1 LINC01561 LOC105378516
GH10H120510 0.4 ENCODE 4.6 -86.7 -86694 1 JUND LINC01561 PIR43908 PLPP4
GH10H120602 0.5 ENCODE 0.7 +3.2 3165 0 CTCF NFE2 RAD21 NFE2L2 LINC01561 LOC105378516
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01561 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01561 Gene

Chromosome:
10
Start:
120,597,949 bp from pter
End:
120,600,124 bp from pter
Size:
2,176 bases
Orientation:
Plus strand

Genomic View for LINC01561 Gene

Genes around LINC01561 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01561 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01561 Gene

Proteins for LINC01561 Gene

  • Protein details for LINC01561 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1V8-CJ085_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01561
    Protein Accession:
    Q8N1V8

    Protein attributes for LINC01561 Gene

    Size:
    128 amino acids
    Molecular mass:
    13299 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01561 Gene

Post-translational modifications for LINC01561 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01561 Gene

Domains & Families for LINC01561 Gene

Protein Domains for LINC01561 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01561: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01561 Gene

Function for LINC01561 Gene

Phenotypes for LINC01561 Gene

genes like me logo Genes that share phenotypes with LINC01561: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for LINC01561
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01561 Gene

Localization for LINC01561 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01561 gene
Compartment Confidence
mitochondrion 2
extracellular 1
peroxisome 1
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01561 Gene

Pathways & Interactions for LINC01561 Gene

SuperPathways for LINC01561 Gene

No Data Available

Interacting Proteins for LINC01561 Gene

Gene Ontology (GO) - Biological Process for LINC01561 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01561 Gene

Drugs & Compounds for LINC01561 Gene

No Compound Related Data Available

Transcripts for LINC01561 Gene

mRNA/cDNA for LINC01561 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for LINC01561
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01561 Gene

No ASD Table

Relevant External Links for LINC01561 Gene

GeneLoc Exon Structure for
LINC01561
ECgene alternative splicing isoforms for
LINC01561

Expression for LINC01561 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01561 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01561 Gene:

LINC01561
genes like me logo Genes that share expression patterns with LINC01561: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01561 Gene

Orthologs for LINC01561 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01561 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10orf85 34
  • 98 (a)
OneToOne
Species where no ortholog for LINC01561 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01561 Gene

ENSEMBL:
Gene Tree for LINC01561 (if available)
TreeFam:
Gene Tree for LINC01561 (if available)

Paralogs for LINC01561 Gene

No data available for Paralogs for LINC01561 Gene

Variants for LINC01561 Gene

Sequence variations from dbSNP and Humsavar for LINC01561 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000381345 -- 120,599,579(+) GACGA(C/T)CGGAA nc-transcript-variant, utr-variant-3-prime
rs1000518853 -- 120,598,748(+) GGACA(C/T)CTTCC nc-transcript-variant, utr-variant-3-prime
rs1000699345 -- 120,598,187(+) TCTGC(A/G)GAAGC nc-transcript-variant, utr-variant-3-prime
rs1001694227 -- 120,598,962(+) TGCAG(C/G)TGAGG nc-transcript-variant, utr-variant-3-prime
rs1001922239 -- 120,599,251(+) CAAAG(A/G)GATGC nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for LINC01561 Gene

Variant ID Type Subtype PubMed ID
esv2760128 CNV gain 21179565
esv3624731 CNV gain 21293372
nsv1052357 CNV gain 25217958
nsv528787 CNV gain 19592680

Variation tolerance for LINC01561 Gene

Gene Damage Index Score: 0.80; 16.91% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01561 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01561

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01561 Gene

Disorders for LINC01561 Gene

Relevant External Links for LINC01561

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01561

No disorders were found for LINC01561 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01561 Gene

Publications for LINC01561 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC01561 Gene

Sources for LINC01561 Gene

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