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Aliases for LINC01561 Gene

Subcategory (RNA class) for LINC01561 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01561 Gene

  • Long Intergenic Non-Protein Coding RNA 1561 2 3
  • C10orf85 3 4
  • Chromosome 10 Open Reading Frame 85 2

External Ids for LINC01561 Gene

Previous HGNC Symbols for LINC01561 Gene

  • C10orf85

Summaries for LINC01561 Gene

GeneCards Summary for LINC01561 Gene

LINC01561 (Long Intergenic Non-Protein Coding RNA 1561) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01561 Gene

Genomics for LINC01561 Gene

Genomic Location for LINC01561 Gene

120,597,949 bp from pter
120,600,124 bp from pter
2,176 bases
Plus strand

Genomic View for LINC01561 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01561 Gene

No data available for Regulatory Elements for LINC01561 Gene

Proteins for LINC01561 Gene

  • Protein details for LINC01561 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein encoded by LINC01561
    Protein Accession:

    Protein attributes for LINC01561 Gene

    128 amino acids
    Molecular mass:
    13299 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01561 Gene

Proteomics data for LINC01561 Gene at MOPED

Post-translational modifications for LINC01561 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01561 Gene

Domains & Families for LINC01561 Gene

Protein Domains for LINC01561 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01561: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01561 Gene

Function for LINC01561 Gene

Phenotypes for LINC01561 Gene

GenomeRNAi human phenotypes for LINC01561:
genes like me logo Genes that share phenotypes with LINC01561: view

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01561
    • Block miRNA regulation of LINC01561 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01561

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01561 Gene

    Localization for LINC01561 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01561 Gene

    Pathways & Interactions for LINC01561 Gene

    SuperPathways for LINC01561 Gene

    No Data Available

    Interacting Proteins for LINC01561 Gene

    Gene Ontology (GO) - Biological Process for LINC01561 Gene


    No data available for Pathways by source and SIGNOR curated interactions for LINC01561 Gene

    Drugs & Compounds for LINC01561 Gene

    No Compound Related Data Available

    Transcripts for LINC01561 Gene

    mRNA/cDNA for LINC01561 Gene

    (1) REFSEQ mRNAs :
    (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Alternative Splicing Database (ASD) splice patterns (SP) for LINC01561 Gene

    No ASD Table

    Relevant External Links for LINC01561 Gene

    GeneLoc Exon Structure for
    ECgene alternative splicing isoforms for

    Expression for LINC01561 Gene

    mRNA expression in normal human tissues for LINC01561 Gene

    genes like me logo Genes that share expression patterns with LINC01561: view

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LINC01561 Gene

    Orthologs for LINC01561 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for LINC01561 Gene

    Organism Taxonomy Gene Similarity Type Details
    (Pan troglodytes)
    Mammalia C10orf85 36
    • 98 (a)
    Species with no ortholog for LINC01561:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for LINC01561 Gene

    Gene Tree for LINC01561 (if available)
    Gene Tree for LINC01561 (if available)

    Paralogs for LINC01561 Gene

    No data available for Paralogs for LINC01561 Gene

    Variants for LINC01561 Gene

    Sequence variations from dbSNP and Humsavar for LINC01561 Gene

    SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
    rs2420785 -- 120,597,205(-) TGTGC(C/T)AGGAA upstream-variant-2KB
    rs2420786 -- 120,597,204(-) GTGCC(A/G)GGAAG upstream-variant-2KB
    rs2901257 -- 120,598,951(-) GTCTC(C/T)CTGTC nc-transcript-variant
    rs3067585 -- 120,599,145(-) GCGGG(A/C/T)TTCCC nc-transcript-variant
    rs4752442 -- 120,598,830(+) TGGGA(C/G)ACACA nc-transcript-variant

    Variation tolerance for LINC01561 Gene

    Gene Damage Index Score: 0.80; 16.91% of all genes are more intolerant (likely to be disease-causing)

    Relevant External Links for LINC01561 Gene

    HapMap Linkage Disequilibrium report

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01561 Gene

    Disorders for LINC01561 Gene

    Relevant External Links for LINC01561

    Atlas of Genetics and Cytogenetics in Oncology and Haematology:
    genes like me logo Genes that share disorders with LINC01561: view

    No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01561 Gene

    Publications for LINC01561 Gene

    1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

    Products for LINC01561 Gene

    Sources for LINC01561 Gene

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