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Aliases for LINC01560 Gene

Subcategory (RNA class) for LINC01560 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01560 Gene

  • Long Intergenic Non-Protein Coding RNA 1560 2 3 5
  • CXorf24 3 4
  • Chromosome X Open Reading Frame 24 2

External Ids for LINC01560 Gene

Previous HGNC Symbols for LINC01560 Gene

  • CXorf24

Summaries for LINC01560 Gene

GeneCards Summary for LINC01560 Gene

LINC01560 (Long Intergenic Non-Protein Coding RNA 1560) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01560 Gene

Genomics for LINC01560 Gene

Regulatory Elements for LINC01560 Gene

Enhancers for LINC01560 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LINC01560 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01560 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LINC01560 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01560 Gene

Chromosome:
X
Start:
47,482,716 bp from pter
End:
47,485,227 bp from pter
Size:
2,512 bases
Orientation:
Plus strand

Genomic View for LINC01560 Gene

Genes around LINC01560 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01560 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01560 Gene

Proteins for LINC01560 Gene

  • Protein details for LINC01560 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TB33-CX024_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01560
    Protein Accession:
    Q8TB33
    Secondary Accessions:
    • Q5H9B1

    Protein attributes for LINC01560 Gene

    Size:
    94 amino acids
    Molecular mass:
    10359 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH25179.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01560 Gene

Proteomics data for LINC01560 Gene at MOPED

Post-translational modifications for LINC01560 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01560 Gene

Domains & Families for LINC01560 Gene

Protein Domains for LINC01560 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01560: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01560 Gene

Function for LINC01560 Gene

Phenotypes for LINC01560 Gene

GenomeRNAi human phenotypes for LINC01560:
genes like me logo Genes that share phenotypes with LINC01560: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01560 Gene

Localization for LINC01560 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01560 Gene

Pathways & Interactions for LINC01560 Gene

SuperPathways for LINC01560 Gene

No Data Available

Interacting Proteins for LINC01560 Gene

Gene Ontology (GO) - Biological Process for LINC01560 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01560 Gene

Drugs & Compounds for LINC01560 Gene

No Compound Related Data Available

Transcripts for LINC01560 Gene

mRNA/cDNA for LINC01560 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01560 Gene

No ASD Table

Relevant External Links for LINC01560 Gene

GeneLoc Exon Structure for
LINC01560
ECgene alternative splicing isoforms for
LINC01560

Expression for LINC01560 Gene

mRNA expression in normal human tissues for LINC01560 Gene

Protein differential expression in normal tissues from HIPED for LINC01560 Gene

This gene is overexpressed in Fetal ovary (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC01560 Gene



genes like me logo Genes that share expression patterns with LINC01560: view

Protein tissue co-expression partners for LINC01560 Gene

- Elite partner

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LINC01560 Gene

Orthologs for LINC01560 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01560 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CXorf24 36
  • 100 (a)
OneToOne
Species with no ortholog for LINC01560:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01560 Gene

ENSEMBL:
Gene Tree for LINC01560 (if available)
TreeFam:
Gene Tree for LINC01560 (if available)

Paralogs for LINC01560 Gene

No data available for Paralogs for LINC01560 Gene

Variants for LINC01560 Gene

Sequence variations from dbSNP and Humsavar for LINC01560 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs754360629 -- 47,485,506(+) GGTCC(A/G)TTGGG downstream-variant-500B
rs755955586 -- 47,485,552(+) AGGCT(C/T)GGGGG downstream-variant-500B
rs756691438 -- 47,485,383(+) CAGGC(A/G)GAGAT downstream-variant-500B
rs140088866 -- 47,485,720(+) AACAG(A/G)GGACA downstream-variant-500B
rs146084906 -- 47,485,587(+) AAAGA(A/G)GCCTG downstream-variant-500B

Variation tolerance for LINC01560 Gene

Gene Damage Index Score: 5.06; 68.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01560 Gene

HapMap Linkage Disequilibrium report
LINC01560

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01560 Gene

Disorders for LINC01560 Gene

Relevant External Links for LINC01560

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01560

No disorders were found for LINC01560 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01560 Gene

Publications for LINC01560 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67

Products for LINC01560 Gene

Sources for LINC01560 Gene

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