Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01560 Gene

Subcategory (RNA class) for LINC01560 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01560 Gene

  • Long Intergenic Non-Protein Coding RNA 1560 2 3 5
  • CXorf24 3 4
  • Chromosome X Open Reading Frame 24 2

External Ids for LINC01560 Gene

Previous HGNC Symbols for LINC01560 Gene

  • CXorf24

Summaries for LINC01560 Gene

GeneCards Summary for LINC01560 Gene

LINC01560 (Long Intergenic Non-Protein Coding RNA 1560) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01560 Gene

Genomics for LINC01560 Gene

Regulatory Elements for LINC01560 Gene

Enhancers for LINC01560 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF047216 1.1 ENCODE 28 -264.2 -264198 5.0 HDGF PKNOX1 WRNIP1 SIN3A DMAP1 FEZF1 ZNF2 YY1 ZNF207 ZNF143 LOC100113397 ZNF674-AS1 LINC01560 ZNF81 ZNF182 INE1 UXT-AS1 LOC100419232 SNORA11C ZNF674
GH0XF048020 1.5 FANTOM5 Ensembl ENCODE 19.9 +538.7 538710 2.1 TBP PKNOX1 WRNIP1 ZNF76 KLF17 RAD21 BRCA1 ZNF2 ZBTB40 YY1 ZNF182 ZNF630 LINC01560 UXT-AS1 SYN1 PIR35699 ZNF630-AS1
GH0XF046544 1.1 ENCODE 18.9 -936.2 -936241 4.6 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 LOC100113397 INE1 LINC01560 LOC392452 SLC9A7 ZNF674-AS1 NUS1P1 KRBOX4 ENSG00000277721
GH0XF047523 1.5 FANTOM5 Ensembl ENCODE 12.7 +41.0 40985 1.4 ATF1 CBX3 ARID4B ZNF2 RAD21 ZNF366 RCOR1 ZNF391 CREM KLF13 ZNF41 LINC01560 CDK16 USP11 ELK1 CFP SYN1 SPACA5 NUS1P1 ARAF
GH0XF047514 1.3 FANTOM5 Ensembl ENCODE 13.5 +33.1 33107 2.4 GTF2F1 TBP TAF1 JUN RFX5 ZNF121 GATA3 RCOR1 FOS TCF7L2 LINC01560 ZNF41 SNORA11C LOC100419232 INE1 UBA1 ZNF674 NDUFB11 CFP ARAF
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01560 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01560 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000259998 784 3801 ZFP64 SIN3A YY1 ZNF121 GLIS2 ZNF263 SP3 YY2 ZHX2 MXD4

Genomic Location for LINC01560 Gene

47,482,716 bp from pter
47,485,227 bp from pter
2,512 bases
Plus strand

Genomic View for LINC01560 Gene

Genes around LINC01560 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01560 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01560 Gene

Proteins for LINC01560 Gene

  • Protein details for LINC01560 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC01560
    Protein Accession:
    Secondary Accessions:
    • Q5H9B1

    Protein attributes for LINC01560 Gene

    94 amino acids
    Molecular mass:
    10359 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH25179.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01560 Gene

Post-translational modifications for LINC01560 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01560 Gene

Domains & Families for LINC01560 Gene

Protein Domains for LINC01560 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01560: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01560 Gene

Function for LINC01560 Gene

Phenotypes for LINC01560 Gene

GenomeRNAi human phenotypes for LINC01560:
genes like me logo Genes that share phenotypes with LINC01560: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01560 Gene

Localization for LINC01560 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01560 gene
Compartment Confidence
nucleus 2
cytosol 2
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01560 Gene

Pathways & Interactions for LINC01560 Gene

SuperPathways for LINC01560 Gene

No Data Available

Interacting Proteins for LINC01560 Gene

Gene Ontology (GO) - Biological Process for LINC01560 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01560 Gene

Transcripts for LINC01560 Gene

mRNA/cDNA for LINC01560 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01560 Gene

No ASD Table

Relevant External Links for LINC01560 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01560 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01560 Gene

Protein differential expression in normal tissues from HIPED for LINC01560 Gene

This gene is overexpressed in Fetal ovary (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LINC01560 Gene

Protein tissue co-expression partners for LINC01560 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of LINC01560 Gene:

genes like me logo Genes that share expression patterns with LINC01560: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LINC01560 Gene

Orthologs for LINC01560 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01560 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CXorf24 35
  • 100 (a)
Species where no ortholog for LINC01560 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01560 Gene

Gene Tree for LINC01560 (if available)
Gene Tree for LINC01560 (if available)

Paralogs for LINC01560 Gene

No data available for Paralogs for LINC01560 Gene

Variants for LINC01560 Gene

Sequence variations from dbSNP and Humsavar for LINC01560 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs11795864 -- 47,484,562(+) tatta(A/C)cagtc nc-transcript-variant, upstream-variant-2KB
rs11797622 -- 47,484,764(+) CATCT(C/T)TACTA nc-transcript-variant, upstream-variant-2KB
rs12859544 -- 47,482,600(+) GTGCG(C/T)GCGTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs140088866 -- 47,485,720(+) AACAG(A/G)GGACA downstream-variant-500B
rs140143694 -- 47,481,089(+) GTTGC(C/T)ATGTT intron-variant, upstream-variant-2KB

Variation tolerance for LINC01560 Gene

Gene Damage Index Score: 5.06; 68.84% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01560 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01560 Gene

Disorders for LINC01560 Gene

Relevant External Links for LINC01560

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC01560 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01560 Gene

Publications for LINC01560 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for LINC01560 Gene

Sources for LINC01560 Gene

Loading form....