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Aliases for LINC01559 Gene

Subcategory (RNA class) for LINC01559 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01559 Gene

  • Long Intergenic Non-Protein Coding RNA 1559 2 3
  • C12orf36 3 4
  • Chromosome 12 Open Reading Frame 36 2

External Ids for LINC01559 Gene

Previous Symbols for LINC01559 Gene

  • C12orf36

Summaries for LINC01559 Gene

GeneCards Summary for LINC01559 Gene

LINC01559 (Long Intergenic Non-Protein Coding RNA 1559) is a RNA Gene, and belongs to non-coding RNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01559 Gene

Genomics for LINC01559 Gene

Genomic Location for LINC01559 Gene

Start:
13,370,671 bp from pter
End:
13,387,167 bp from pter
Size:
16,497 bases
Orientation:
Minus strand

Genomic View for LINC01559 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01559 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01559 Gene

No data available for Regulatory Elements for LINC01559 Gene

Proteins for LINC01559 Gene

  • Protein details for LINC01559 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q495D7-CL036_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01559
    Protein Accession:
    Q495D7
    Secondary Accessions:
    • Q8N280

    Protein attributes for LINC01559 Gene

    Size:
    138 amino acids
    Molecular mass:
    15996 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01559 Gene

Proteomics data for LINC01559 Gene at MOPED

Post-translational modifications for LINC01559 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01559 Gene

Domains for LINC01559 Gene

Protein Domains for LINC01559 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01559: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LINC01559 Gene

Function for LINC01559 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01559 Gene

Localization for LINC01559 Gene

No data available for Gene Ontology (GO) - Cellular Components for LINC01559 Gene

Pathways for LINC01559 Gene

SuperPathways for LINC01559 Gene

No Data Available

Interacting Proteins for LINC01559 Gene

Gene Ontology (GO) - Biological Process for LINC01559 Gene

None

No data available for Pathways by source for LINC01559 Gene

Transcripts for LINC01559 Gene

mRNA/cDNA for LINC01559 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01559 Gene

No ASD Table

Relevant External Links for LINC01559 Gene

GeneLoc Exon Structure for
LINC01559
ECgene alternative splicing isoforms for
LINC01559

Expression for LINC01559 Gene

mRNA expression in normal human tissues for LINC01559 Gene

genes like me logo Genes that share expressions with LINC01559: view

Orthologs for LINC01559 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01559 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C12orf36 37
  • 99 (a)
OneToOne
Species with no ortholog for LINC01559:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01559 Gene

ENSEMBL:
Gene Tree for LINC01559 (if available)
TreeFam:
Gene Tree for LINC01559 (if available)

Paralogs for LINC01559 Gene

No data available for Paralogs for LINC01559 Gene

Variants for LINC01559 Gene

Sequence variations from dbSNP and Humsavar for LINC01559 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs880759 -- 13,377,293(+) GCTTT(G/T)GGCCT upstream-variant-2KB
rs880760 -- 13,377,334(+) CGTGC(C/T)AGTCA upstream-variant-2KB
rs882159 -- 13,378,265(-) CCTCC(G/T)GCCTT upstream-variant-2KB
rs1382676 -- 13,375,300(+) TCAGC(A/G)CACCC intron-variant
rs1382677 -- 13,375,499(+) CCCAC(C/T)TTCCT intron-variant

Relevant External Links for LINC01559 Gene

HapMap Linkage Disequilibrium report
LINC01559

No data available for Structural Variations from Database of Genomic Variants (DGV) for LINC01559 Gene

Disorders for LINC01559 Gene

No disorders were found for LINC01559 Gene.

No data available for UniProtKB/Swiss-Prot for LINC01559 Gene

Publications for LINC01559 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. (PMID: 23377640) (Am J Psychiatry 2013) 3
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LINC01559 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01559
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01559
    • Block miRNA regulation of LINC01559 using miScript Target Protectors

    Sources for LINC01559 Gene

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