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Aliases for LINC01556 Gene

Subcategory (RNA class) for LINC01556 Gene


Quality Score for this RNA gene is


Aliases for LINC01556 Gene

  • Long Intergenic Non-Protein Coding RNA 1556 2 3 5
  • C6orf100 3 4
  • Chromosome 6 Open Reading Frame 100 2
  • DJ25J6.5 3

External Ids for LINC01556 Gene

ORGUL Members for LINC01556 Gene

Previous HGNC Symbols for LINC01556 Gene

  • C6orf100

Summaries for LINC01556 Gene

GeneCards Summary for LINC01556 Gene

LINC01556 (Long Intergenic Non-Protein Coding RNA 1556) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01556 Gene

Genomics for LINC01556 Gene

Regulatory Elements for LINC01556 Gene

Enhancers for LINC01556 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around LINC01556 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01556 Gene

28,943,784 bp from pter
28,944,538 bp from pter
755 bases
Plus strand

Genomic View for LINC01556 Gene

Genes around LINC01556 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LINC01556 Gene

  • Protein details for LINC01556 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC01556
    Protein Accession:
    Secondary Accessions:
    • B0S7Y3
    • B0V298
    • Q5SNN6
    • Q96KW1

    Protein attributes for LINC01556 Gene

    62 amino acids
    Molecular mass:
    7289 Da
    Quaternary structure:
    No Data Available
    • Sequence=CAC69878.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01556 Gene

Post-translational modifications for LINC01556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01556 Gene

Domains & Families for LINC01556 Gene

Protein Domains for LINC01556 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01556: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01556 Gene

Function for LINC01556 Gene

Phenotypes for LINC01556 Gene

genes like me logo Genes that share phenotypes with LINC01556: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01556 Gene

Localization for LINC01556 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01556 Gene

Pathways & Interactions for LINC01556 Gene

SuperPathways for LINC01556 Gene

No Data Available

Interacting Proteins for LINC01556 Gene

Gene Ontology (GO) - Biological Process for LINC01556 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01556 Gene

Drugs & Compounds for LINC01556 Gene

No Compound Related Data Available

Transcripts for LINC01556 Gene

mRNA/cDNA for LINC01556 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01556 Gene

No ASD Table

Relevant External Links for LINC01556 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01556 Gene

mRNA expression in normal human tissues for LINC01556 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01556 Gene:

genes like me logo Genes that share expression patterns with LINC01556: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01556 Gene

Orthologs for LINC01556 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01556 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C6orf100 35
  • 95 (a)
Species where no ortholog for LINC01556 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01556 Gene

Gene Tree for LINC01556 (if available)
Gene Tree for LINC01556 (if available)

Paralogs for LINC01556 Gene

No data available for Paralogs for LINC01556 Gene

Variants for LINC01556 Gene

Sequence variations from dbSNP and Humsavar for LINC01556 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs2071790 - 28,944,025(-) TTACT(C/T)CCTGG nc-transcript-variant
rs6906225 -- 28,944,057(+) GCAAG(G/T)CCAAC nc-transcript-variant
rs6931968 -- 28,943,099(+) AGAAG(A/T)TAACA upstream-variant-2KB
rs2071785 -- 28,944,681(-) TTTGG(A/G)TCAAG downstream-variant-500B
rs2071786 -- 28,944,660(-) ATGGC(A/G)AAACA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for LINC01556 Gene

Variant ID Type Subtype PubMed ID
nsv1074388 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv830622 CNV gain 17160897

Variation tolerance for LINC01556 Gene

Gene Damage Index Score: 0.27; 6.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01556 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01556 Gene

Disorders for LINC01556 Gene

Relevant External Links for LINC01556

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC01556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01556 Gene

Publications for LINC01556 Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 65
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4 65

Products for LINC01556 Gene

Sources for LINC01556 Gene

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