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Aliases for LINC01556 Gene

Subcategory (RNA class) for LINC01556 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for LINC01556 Gene

  • Long Intergenic Non-Protein Coding RNA 1556 2 3 5
  • C6orf100 3 4
  • Chromosome 6 Open Reading Frame 100 2
  • DJ25J6.5 3

External Ids for LINC01556 Gene

ORGUL Members for LINC01556 Gene

Previous HGNC Symbols for LINC01556 Gene

  • C6orf100

Summaries for LINC01556 Gene

GeneCards Summary for LINC01556 Gene

LINC01556 (Long Intergenic Non-Protein Coding RNA 1556) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01556 Gene

Genomics for LINC01556 Gene

Regulatory Elements for LINC01556 Gene

Enhancers for LINC01556 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028838 1.2 ENCODE 16.4 -105.3 -105305 2.2 CREB3L1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC GLIS1 RCOR2 NBN TRIM27 ZKSCAN3 ZKSCAN4 LINC01556 RPL23AP1 IFITM4P ZFP57 HCG14 ZKSCAN8 HLA-F-AS1
GH06G028880 1.6 Ensembl ENCODE dbSUPER 11.4 -62.5 -62517 1.3 HDGF PKNOX1 CREB3L1 ARNT ZFP64 ARID4B DMAP1 YBX1 ZNF2 SLC30A9 ZKSCAN3 ZKSCAN8 TRIM27 ZKSCAN4 HLA-F-AS1 MICE ZSCAN9 LINC01556 HCG9P5 ZNF603P
GH06G028939 1.7 Ensembl ENCODE dbSUPER 7.7 -2.8 -2751 3.1 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF263 SP3 TBX21 SSRP1 ZNF610 ZKSCAN8 ZKSCAN3 TRIM27 ZKSCAN4 ZSCAN9 HCG4P7 HLA-H HLA-F-AS1 ZSCAN26 MICE
GH06G028906 1.1 ENCODE dbSUPER 11.3 -36.2 -36193 1.8 HDGF HDAC1 CBX3 RB1 ZBTB40 CHAMP1 TCF12 EGR1 FOS PAF1 TRIM27 LINC01556 GC06P028921 HCG14
GH06G028877 0.9 ENCODE dbSUPER 11.4 -66.1 -66073 1.1 ZNF3 SAP130 HLF ZMYM3 CEBPB CEBPG HMG20A ZNF384 ATM HNF1A TRIM27 LINC01556 ZNF602P ZSCAN23 GC06P028888 LINC01623
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01556 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01556 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195292 216 1601 HDGF MLX CREB3L1 ARNT ZFP64 ARID4B FEZF1 DMAP1 ZNF2 ZNF766

Genomic Location for LINC01556 Gene

Chromosome:
6
Start:
28,943,784 bp from pter
End:
28,944,538 bp from pter
Size:
755 bases
Orientation:
Plus strand

Genomic View for LINC01556 Gene

Genes around LINC01556 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LINC01556 Gene

  • Protein details for LINC01556 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JQF7-CF100_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01556
    Protein Accession:
    Q5JQF7
    Secondary Accessions:
    • B0S7Y3
    • B0V298
    • Q5SNN6
    • Q96KW1

    Protein attributes for LINC01556 Gene

    Size:
    62 amino acids
    Molecular mass:
    7289 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAC69878.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01556 Gene

Post-translational modifications for LINC01556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01556 Gene

Domains & Families for LINC01556 Gene

Protein Domains for LINC01556 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01556: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01556 Gene

Function for LINC01556 Gene

Phenotypes for LINC01556 Gene

genes like me logo Genes that share phenotypes with LINC01556: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01556 Gene

Localization for LINC01556 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01556 gene
Compartment Confidence
mitochondrion 2
nucleus 2
cytosol 2
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01556 Gene

Pathways & Interactions for LINC01556 Gene

SuperPathways for LINC01556 Gene

No Data Available

Interacting Proteins for LINC01556 Gene

Gene Ontology (GO) - Biological Process for LINC01556 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01556 Gene

Drugs & Compounds for LINC01556 Gene

No Compound Related Data Available

Transcripts for LINC01556 Gene

mRNA/cDNA for LINC01556 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01556 Gene

No ASD Table

Relevant External Links for LINC01556 Gene

GeneLoc Exon Structure for
LINC01556
ECgene alternative splicing isoforms for
LINC01556

Expression for LINC01556 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01556 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01556 Gene:

LINC01556
genes like me logo Genes that share expression patterns with LINC01556: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01556 Gene

Orthologs for LINC01556 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01556 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C6orf100 35
  • 95 (a)
OneToOne
Species where no ortholog for LINC01556 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01556 Gene

ENSEMBL:
Gene Tree for LINC01556 (if available)
TreeFam:
Gene Tree for LINC01556 (if available)

Paralogs for LINC01556 Gene

No data available for Paralogs for LINC01556 Gene

Variants for LINC01556 Gene

Sequence variations from dbSNP and Humsavar for LINC01556 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000421973 -- 28,942,870(+) CCTAG(C/G)CGACT upstream-variant-2KB
rs1001684491 -- 28,943,797(+) AGCCC(C/T)TCCCT nc-transcript-variant
rs1002164807 -- 28,944,117(+) GACCT(C/T)CTCCC nc-transcript-variant
rs1004109645 -- 28,944,600(+) AGCGC(A/G)TCAGT intron-variant
rs1004222726 -- 28,944,646(+) GGGGG(A/C/T)AAGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01556 Gene

Variant ID Type Subtype PubMed ID
nsv1074388 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259
nsv830622 CNV gain 17160897

Variation tolerance for LINC01556 Gene

Gene Damage Index Score: 0.27; 6.05% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01556 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01556

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01556 Gene

Disorders for LINC01556 Gene

Relevant External Links for LINC01556

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01556

No disorders were found for LINC01556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01556 Gene

Publications for LINC01556 Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 64
  2. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4 64

Products for LINC01556 Gene

Sources for LINC01556 Gene

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