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Aliases for LINC01555 Gene

Subcategory (RNA class) for LINC01555 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01555 Gene

  • Long Intergenic Non-Protein Coding RNA 1555 2 3
  • C1orf180 3 4
  • Chromosome 1 Open Reading Frame 180 2

External Ids for LINC01555 Gene

Previous Symbols for LINC01555 Gene

  • C1orf180

Summaries for LINC01555 Gene

GeneCards Summary for LINC01555 Gene

LINC01555 (Long Intergenic Non-Protein Coding RNA 1555) is a RNA Gene, and belongs to non-coding RNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01555 Gene

Genomics for LINC01555 Gene

Genomic Location for LINC01555 Gene

Start:
84,628,230 bp from pter
End:
84,635,020 bp from pter
Size:
6,791 bases
Orientation:
Minus strand

Genomic View for LINC01555 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01555 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01555 Gene

No data available for Regulatory Elements for LINC01555 Gene

Proteins for LINC01555 Gene

  • Protein details for LINC01555 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAE3-CA180_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01555
    Protein Accession:
    Q8NAE3
    Secondary Accessions:

    Protein attributes for LINC01555 Gene

    Size:
    123 amino acids
    Molecular mass:
    13125 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01555 Gene

Proteomics data for LINC01555 Gene at MOPED

Post-translational modifications for LINC01555 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01555 Gene

Domains for LINC01555 Gene

Protein Domains for LINC01555 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01555: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LINC01555 Gene

Function for LINC01555 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01555 Gene

Localization for LINC01555 Gene

No data available for Gene Ontology (GO) - Cellular Components for LINC01555 Gene

Pathways for LINC01555 Gene

SuperPathways for LINC01555 Gene

No Data Available

Interacting Proteins for LINC01555 Gene

Gene Ontology (GO) - Biological Process for LINC01555 Gene

None

No data available for Pathways by source for LINC01555 Gene

Transcripts for LINC01555 Gene

mRNA/cDNA for LINC01555 Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01555 Gene

No ASD Table

Relevant External Links for LINC01555 Gene

GeneLoc Exon Structure for
LINC01555
ECgene alternative splicing isoforms for
LINC01555

Expression for LINC01555 Gene

mRNA expression in normal human tissues for LINC01555 Gene

genes like me logo Genes that share expressions with LINC01555: view

Orthologs for LINC01555 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01555 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1orf180 37
  • 98 (a)
OneToOne
Species with no ortholog for LINC01555:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01555 Gene

ENSEMBL:
Gene Tree for LINC01555 (if available)
TreeFam:
Gene Tree for LINC01555 (if available)

Paralogs for LINC01555 Gene

No data available for Paralogs for LINC01555 Gene

Variants for LINC01555 Gene

Sequence variations from dbSNP and Humsavar for LINC01555 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1340522 -- 84,636,326(-) GTGCC(A/T)CTGTC upstream-variant-2KB
rs2945131 -- 84,629,316(-) gctct(C/T)tttaa nc-transcript-variant
rs2945132 -- 84,629,075(-) TCCCT(C/T)TGTGA nc-transcript-variant
rs2994924 -- 84,634,197(-) Gcagg(C/T)atggt intron-variant
rs2994925 -- 84,632,273(-) CTGGC(A/G)GCCGA intron-variant

Relevant External Links for LINC01555 Gene

HapMap Linkage Disequilibrium report
LINC01555

No data available for Structural Variations from Database of Genomic Variants (DGV) for LINC01555 Gene

Disorders for LINC01555 Gene

No disorders were found for LINC01555 Gene.

No data available for UniProtKB/Swiss-Prot for LINC01555 Gene

Publications for LINC01555 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LINC01555 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01555
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01555
    • Block miRNA regulation of LINC01555 using miScript Target Protectors

    Sources for LINC01555 Gene

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