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Aliases for LINC01555 Gene

Subcategory (RNA class) for LINC01555 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01555 Gene

  • Long Intergenic Non-Protein Coding RNA 1555 2 3 5
  • C1orf180 3 4
  • Chromosome 1 Open Reading Frame 180 2

External Ids for LINC01555 Gene

Previous HGNC Symbols for LINC01555 Gene

  • C1orf180

Summaries for LINC01555 Gene

GeneCards Summary for LINC01555 Gene

LINC01555 (Long Intergenic Non-Protein Coding RNA 1555) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01555 Gene

Genomics for LINC01555 Gene

Regulatory Elements for LINC01555 Gene

Enhancers for LINC01555 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F084686 1.1 ENCODE 5.6 -55.2 -55206 7.2 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 FOS SP3 SP5 NFYC LOC105378818 SSX2IP LINC01555 CTBS ENSG00000232622
GH01F084697 1.1 Ensembl ENCODE 5.6 -63.8 -63819 3.5 PKNOX1 INSM2 SIN3A SCRT2 FOS ZNF263 CEBPB ZEB2 MAFF PBX2 LPAR3 RPF1 SSX2IP LINC01555 CTBS GC01P084746
GH01F084711 0.5 ENCODE 5.8 -77.1 -77085 2.1 IKZF1 ZBTB33 FOS LPAR3 LINC01555 CTBS SSX2IP GC01P084746
GH01F084705 0.4 Ensembl 5.6 -70.2 -70181 0.4 SPI1 LPAR3 LINC01555 SSX2IP GC01P084746
GH01F084630 1.1 Ensembl ENCODE 0.8 +1.5 1524 5.9 PKNOX1 RCOR1 FOS ZEB2 ZNF217 SMARCA4 GLIS1 IKZF1 STAT3 WT1 SPATA1 GNG5 RPF1 CTBS LINC01555 LINC01461
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01555 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01555 Gene

Chromosome:
1
Start:
84,628,230 bp from pter
End:
84,635,020 bp from pter
Size:
6,791 bases
Orientation:
Minus strand

Genomic View for LINC01555 Gene

Genes around LINC01555 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01555 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01555 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01555 Gene

Proteins for LINC01555 Gene

  • Protein details for LINC01555 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NAE3-CA180_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01555
    Protein Accession:
    Q8NAE3

    Protein attributes for LINC01555 Gene

    Size:
    123 amino acids
    Molecular mass:
    13125 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01555 Gene

Post-translational modifications for LINC01555 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01555 Gene

Domains & Families for LINC01555 Gene

Protein Domains for LINC01555 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01555: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01555 Gene

Function for LINC01555 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01555 Gene

Localization for LINC01555 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01555 gene
Compartment Confidence
extracellular 3
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01555 Gene

Pathways & Interactions for LINC01555 Gene

SuperPathways for LINC01555 Gene

No Data Available

Interacting Proteins for LINC01555 Gene

Gene Ontology (GO) - Biological Process for LINC01555 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01555 Gene

Transcripts for LINC01555 Gene

mRNA/cDNA for LINC01555 Gene

(1) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01555 Gene

No ASD Table

Relevant External Links for LINC01555 Gene

GeneLoc Exon Structure for
LINC01555
ECgene alternative splicing isoforms for
LINC01555

Expression for LINC01555 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01555 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01555 Gene:

LINC01555
genes like me logo Genes that share expression patterns with LINC01555: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01555 Gene

Orthologs for LINC01555 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01555 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1orf180 35
  • 98 (a)
OneToOne
Species where no ortholog for LINC01555 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01555 Gene

ENSEMBL:
Gene Tree for LINC01555 (if available)
TreeFam:
Gene Tree for LINC01555 (if available)

Paralogs for LINC01555 Gene

No data available for Paralogs for LINC01555 Gene

Variants for LINC01555 Gene

Sequence variations from dbSNP and Humsavar for LINC01555 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10531253 -- 84,628,593(+) AAACA(-/TG)TGTGT nc-transcript-variant
rs111239377 -- 84,628,026(+) TTACA(A/G)TAGGA downstream-variant-500B
rs111622754 -- 84,628,822(+) TCCAT(C/G)AACAT nc-transcript-variant
rs11164026 -- 84,628,611(+) GTGTG(C/T)GTGTG nc-transcript-variant
rs11164027 -- 84,630,909(+) TGTTA(C/T)TATAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01555 Gene

Variant ID Type Subtype PubMed ID
dgv60e212 CNV loss 25503493
esv3893779 CNV gain 25118596
nsv1000325 CNV gain 25217958

Variation tolerance for LINC01555 Gene

Gene Damage Index Score: 0.47; 10.17% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01555 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01555

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01555 Gene

Disorders for LINC01555 Gene

Relevant External Links for LINC01555

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01555

No disorders were found for LINC01555 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01555 Gene

Publications for LINC01555 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01555 Gene

Sources for LINC01555 Gene

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