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Aliases for LINC01554 Gene

Subcategory (RNA class) for LINC01554 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01554 Gene

  • Long Intergenic Non-Protein Coding RNA 1554 2 3 5
  • C5orf27 3 4
  • Chromosome 5 Open Reading Frame 27 2
  • Protein FIS 4
  • FIS 3

External Ids for LINC01554 Gene

Previous HGNC Symbols for LINC01554 Gene

  • C5orf27

Summaries for LINC01554 Gene

GeneCards Summary for LINC01554 Gene

LINC01554 (Long Intergenic Non-Protein Coding RNA 1554) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01554 Gene

Genomics for LINC01554 Gene

Regulatory Elements for LINC01554 Gene

Enhancers for LINC01554 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G095814 1.3 ENCODE dbSUPER 19.1 -32.2 -32247 10.4 HDGF PKNOX1 FOXA2 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 YBX1 ZNF2 LINC01554 ENSG00000251409 ENSG00000250240 RHOBTB3 GLRX LOC105379091 SPATA9 HSPD1P11 LOC100528061
GH05G095825 1.3 ENCODE dbSUPER 17 -25.1 -25095 3.4 PKNOX1 FOXA2 MLX ARID4B DMAP1 FEZF1 ZNF48 YY1 TCF12 GATA2 LINC01554 ENSG00000251409 LOC105379091 LOC100528061 RHOBTB3 ENSG00000250240 GLRX
GH05G095807 1.5 Ensembl ENCODE dbSUPER 11.5 -42.1 -42080 5.4 WRNIP1 ARID4B SIN3A DMAP1 ZNF48 GATA2 ELK1 ZNF263 SP5 MXD4 ENSG00000251409 LINC01554 ENSG00000250240 RHOBTB3 LOC105379091 SPATA9 HSPD1P11 GLRX
GH05G095800 1.4 Ensembl ENCODE dbSUPER 11.9 -49.0 -49049 4.7 ELF3 FOXA2 ARID4B DMAP1 RARA SLC30A9 CREM MIXL1 THAP11 ZNF362 LINC01554 ENSG00000251409 RHOBTB3 LOC105379091 ENSG00000250240 LOC100528061 GLRX HSPD1P11
GH05G095773 1.4 Ensembl ENCODE dbSUPER 11.8 -78.5 -78491 1.5 HDAC1 FOS ZBTB2 CEBPB ZEB2 ZNF592 POLR2H NFIC MAFF RAD51 RHOBTB3 LINC01554 ENSG00000250240 GLRX ENSG00000251409 SPATA9 HSPD1P11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01554 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01554 Gene

95,852,232 bp from pter
95,860,133 bp from pter
7,902 bases
Plus strand

Genomic View for LINC01554 Gene

Genes around LINC01554 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01554 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01554 Gene

Proteins for LINC01554 Gene

  • Protein details for LINC01554 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein encoded by LINC01554
    Protein Accession:
    Secondary Accessions:
    • B2RBN1
    • Q86YS4

    Protein attributes for LINC01554 Gene

    96 amino acids
    Molecular mass:
    10857 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01554 Gene

Post-translational modifications for LINC01554 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01554 Gene

Domains & Families for LINC01554 Gene

Protein Domains for LINC01554 Gene


Suggested Antigen Peptide Sequences for LINC01554 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01554: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LINC01554 Gene

Function for LINC01554 Gene

Phenotypes for LINC01554 Gene

GenomeRNAi human phenotypes for LINC01554:
genes like me logo Genes that share phenotypes with LINC01554: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01554 Gene

Localization for LINC01554 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01554 Gene

Pathways & Interactions for LINC01554 Gene

SuperPathways for LINC01554 Gene

No Data Available

Interacting Proteins for LINC01554 Gene

Gene Ontology (GO) - Biological Process for LINC01554 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01554 Gene

Drugs & Compounds for LINC01554 Gene

No Compound Related Data Available

Transcripts for LINC01554 Gene

mRNA/cDNA for LINC01554 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01554 Gene

No ASD Table

Relevant External Links for LINC01554 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01554 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01554 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01554 Gene:

genes like me logo Genes that share expression patterns with LINC01554: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01554 Gene

Orthologs for LINC01554 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01554 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia C5orf27 35
  • 100 (a)
Species where no ortholog for LINC01554 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01554 Gene

Gene Tree for LINC01554 (if available)
Gene Tree for LINC01554 (if available)

Paralogs for LINC01554 Gene

No data available for Paralogs for LINC01554 Gene

Variants for LINC01554 Gene

Sequence variations from dbSNP and Humsavar for LINC01554 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000477095 -- 95,852,290(+) TTGCA(A/G)TAAAT nc-transcript-variant
rs1000546557 -- 95,854,886(+) TTTGT(G/T)GACTG intron-variant
rs1000687983 -- 95,859,795(+) AGCAC(C/G)TGGAG nc-transcript-variant, upstream-variant-2KB
rs1000981859 -- 95,856,773(+) GGACG(A/G)GTTGG intron-variant
rs1001016102 -- 95,856,400(+) CAAGC(A/G)TTCAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01554 Gene

Variant ID Type Subtype PubMed ID
nsv1015180 CNV gain 25217958
nsv830409 CNV gain 17160897

Variation tolerance for LINC01554 Gene

Gene Damage Index Score: 4.31; 62.92% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01554 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01554 Gene

Disorders for LINC01554 Gene

Relevant External Links for LINC01554

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LINC01554 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01554 Gene

Publications for LINC01554 Gene

  1. Identification of a RNA-Seq Based 8-Long Non-Coding RNA Signature Predicting Survival in Esophageal Cancer. (PMID: 28028307) Fan Q. … Liu B. (Med. Sci. Monit. 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Role of decreased levels of Fis histone-like protein in Crohn's disease-associated adherent invasive Escherichia coli LF82 bacteria interacting with intestinal epithelial cells. (PMID: 20118249) Miquel S. … Darfeuille-Michaud A. (J. Bacteriol. 2010) 22 64
  4. Polycomb group proteins function in the female gametophyte to determine seed development in plants. (PMID: 17855429) Leroy O. … KAPhler C. (Development 2007) 22 64
  5. Fis is required for proper regulation of ssaG expression in Salmonella enterica serovar Typhimurium. (PMID: 16777370) Lim S. … Ryu S. (Microb. Pathog. 2006) 22 64

Products for LINC01554 Gene

Sources for LINC01554 Gene

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