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Aliases for LINC01554 Gene

Subcategory (RNA class) for LINC01554 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01554 Gene

  • Long Intergenic Non-Protein Coding RNA 1554 2 3
  • C5orf27 3 4
  • Chromosome 5 Open Reading Frame 27 2
  • Protein FIS 4
  • FIS 3

External Ids for LINC01554 Gene

Previous HGNC Symbols for LINC01554 Gene

  • C5orf27

Summaries for LINC01554 Gene

GeneCards Summary for LINC01554 Gene

LINC01554 (Long Intergenic Non-Protein Coding RNA 1554) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01554 Gene

Genomics for LINC01554 Gene

Genomic Location for LINC01554 Gene

Start:
95,852,232 bp from pter
End:
95,860,133 bp from pter
Size:
7,902 bases
Orientation:
Plus strand

Genomic View for LINC01554 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01554 Gene

No data available for Regulatory Elements for LINC01554 Gene

Proteins for LINC01554 Gene

  • Protein details for LINC01554 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q52M75-CE027_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01554
    Protein Accession:
    Q52M75
    Secondary Accessions:
    • B2RBN1
    • Q86YS4

    Protein attributes for LINC01554 Gene

    Size:
    96 amino acids
    Molecular mass:
    10857 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01554 Gene

Proteomics data for LINC01554 Gene at MOPED

Post-translational modifications for LINC01554 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01554 Gene

Domains for LINC01554 Gene

Protein Domains for LINC01554 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01554: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01554 Gene

Function for LINC01554 Gene

Phenotypes for LINC01554 Gene

GenomeRNAi human phenotypes for LINC01554:
genes like me logo Genes that share phenotypes with LINC01554: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01554 Gene

Localization for LINC01554 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01554 Gene

Pathways for LINC01554 Gene

SuperPathways for LINC01554 Gene

No Data Available

Interacting Proteins for LINC01554 Gene

Gene Ontology (GO) - Biological Process for LINC01554 Gene

None

No data available for Pathways by source for LINC01554 Gene

Transcripts for LINC01554 Gene

mRNA/cDNA for LINC01554 Gene

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01554
    • Block miRNA regulation of LINC01554 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01554

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LINC01554 Gene

    No ASD Table

    Relevant External Links for LINC01554 Gene

    GeneLoc Exon Structure for
    LINC01554
    ECgene alternative splicing isoforms for
    LINC01554

    Expression for LINC01554 Gene

    mRNA expression in normal human tissues for LINC01554 Gene

    genes like me logo Genes that share expressions with LINC01554: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for LINC01554 Gene

    Orthologs for LINC01554 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for LINC01554 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia C5orf27 36
    • 100 (a)
    OneToOne
    Species with no ortholog for LINC01554:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for LINC01554 Gene

    ENSEMBL:
    Gene Tree for LINC01554 (if available)
    TreeFam:
    Gene Tree for LINC01554 (if available)

    Paralogs for LINC01554 Gene

    No data available for Paralogs for LINC01554 Gene

    Variants for LINC01554 Gene

    Sequence variations from dbSNP and Humsavar for LINC01554 Gene

    SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
    rs154446 -- 95,858,625(-) TGTGT(G/T)CATGT intron-variant
    rs889300 -- 95,856,513(+) GGTGT(A/C)CCCCA intron-variant
    rs2080947 -- 95,857,072(-) TTTAT(C/G)GTTAT intron-variant
    rs2546193 -- 95,858,036(-) ATGGC(C/T)CTGCT intron-variant
    rs2546194 -- 95,857,608(-) AGCCA(C/T)GTGCC intron-variant

    Relevant External Links for LINC01554 Gene

    HapMap Linkage Disequilibrium report
    LINC01554

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01554 Gene

    Disorders for LINC01554 Gene

    (1) Novoseek inferred disease relationships for LINC01554 Gene

    Disease -log(P) Hits PubMed IDs
    tumors 0 2
    genes like me logo Genes that share disorders with LINC01554: view

    No data available for UniProtKB/Swiss-Prot for LINC01554 Gene

    Publications for LINC01554 Gene

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
    3. Fis binding in the dnaA operon promoter region. (PMID: 8830699) Froelich J.M. … Zyskind J.W. (J. Bacteriol. 1996) 23
    4. The transactivation region of the fis protein that controls site-specific DNA inversion contains extended mobile beta-hairpin arms. (PMID: 9362499) Safo M.K. … Johnson R.C. (EMBO J. 1997) 23
    5. Evolution of new protein function: recombinational enhancer Fis originated by horizontal gene transfer from the transcriptional regulator NtrC. (PMID: 9738943) Morett E. … Bork P. (FEBS Lett. 1998) 23

    Products for LINC01554 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01554
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01554
      • Block miRNA regulation of LINC01554 using miScript Target Protectors

      Sources for LINC01554 Gene

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