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Aliases for LINC01553 Gene

Subcategory (RNA class) for LINC01553 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01553 Gene

  • Long Intergenic Non-Protein Coding RNA 1553 2 3 5
  • C10orf40 3 4
  • Chromosome 10 Open Reading Frame 40 2

External Ids for LINC01553 Gene

Previous HGNC Symbols for LINC01553 Gene

  • C10orf40

Summaries for LINC01553 Gene

GeneCards Summary for LINC01553 Gene

LINC01553 (Long Intergenic Non-Protein Coding RNA 1553) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01553 Gene

Genomics for LINC01553 Gene

Regulatory Elements for LINC01553 Gene

Enhancers for LINC01553 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F060003 0.6 ENCODE 10.9 -42.8 -42838 1.5 HDGF BRD4 PKNOX1 TEAD4 RELA ZNF639 NR4A1 TEAD2 ATF2 BCL11A LINC01553 GC10P059971 ENSG00000232682
GH10F059909 0.2 ENCODE 10.4 +50.9 50915 0.1 HMBOX1 LINC01553 CCDC6 GC10M059925
GH10F059959 0.5 ENCODE 8.6 +1.3 1280 1.1 ZKSCAN8 CEBPB GTF2A2 LINC01553 GC10P059958
GH10F059964 1 Ensembl ENCODE 7.9 -5.7 -5660 4.1 PKNOX1 SIN3A RAD21 CHAMP1 ZNF121 RCOR1 FOS ZNF280D CEBPB ZHX2 CCDC6 LINC01553 GC10P059971
GH10F059960 0.7 ENCODE 0.8 -0.1 -125 0.2 SCRT2 ATF2 LINC01553 GC10P059971
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around LINC01553 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01553 Gene

Chromosome:
10
Start:
59,955,430 bp from pter
End:
59,960,913 bp from pter
Size:
5,484 bases
Orientation:
Minus strand

Genomic View for LINC01553 Gene

Genes around LINC01553 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01553 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01553 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01553 Gene

Proteins for LINC01553 Gene

  • Protein details for LINC01553 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A4QN01-CJ040_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01553
    Protein Accession:
    A4QN01
    Secondary Accessions:
    • A6NCD0

    Protein attributes for LINC01553 Gene

    Size:
    128 amino acids
    Molecular mass:
    15288 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01553 Gene

Post-translational modifications for LINC01553 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC01553 Gene

Domains & Families for LINC01553 Gene

Protein Domains for LINC01553 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01553: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01553 Gene

Function for LINC01553 Gene

Phenotypes for LINC01553 Gene

GenomeRNAi human phenotypes for LINC01553:
genes like me logo Genes that share phenotypes with LINC01553: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01553 Gene

Localization for LINC01553 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01553 Gene

Pathways & Interactions for LINC01553 Gene

SuperPathways for LINC01553 Gene

No Data Available

Interacting Proteins for LINC01553 Gene

Gene Ontology (GO) - Biological Process for LINC01553 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01553 Gene

Transcripts for LINC01553 Gene

mRNA/cDNA for LINC01553 Gene

(1) REFSEQ mRNAs :
(10) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01553 Gene

No ASD Table

Relevant External Links for LINC01553 Gene

GeneLoc Exon Structure for
LINC01553
ECgene alternative splicing isoforms for
LINC01553

Expression for LINC01553 Gene

mRNA expression in normal human tissues for LINC01553 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01553 Gene:

LINC01553
genes like me logo Genes that share expression patterns with LINC01553: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01553 Gene

Orthologs for LINC01553 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01553 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C10orf40 35
  • 98 (a)
OneToOne
Species where no ortholog for LINC01553 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01553 Gene

ENSEMBL:
Gene Tree for LINC01553 (if available)
TreeFam:
Gene Tree for LINC01553 (if available)

Paralogs for LINC01553 Gene

No data available for Paralogs for LINC01553 Gene

Variants for LINC01553 Gene

Sequence variations from dbSNP and Humsavar for LINC01553 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10821618 -- 59,961,325(+) TTACA(C/T)TCTCA upstream-variant-2KB
rs10821619 -- 59,961,358(+) CAATA(C/T)TTGTT upstream-variant-2KB
rs10994091 -- 59,959,401(+) CTTTT(C/T)GCAAA nc-transcript-variant
rs112765623 -- 59,961,569(+) AATTC(C/T)TTATA upstream-variant-2KB
rs113184687 -- 59,959,043(+) CCTCC(A/C/G)AGATA nc-transcript-variant

Variation tolerance for LINC01553 Gene

Gene Damage Index Score: 0.79; 16.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01553 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01553

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01553 Gene

Disorders for LINC01553 Gene

Relevant External Links for LINC01553

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01553

No disorders were found for LINC01553 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01553 Gene

Publications for LINC01553 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for LINC01553 Gene

Sources for LINC01553 Gene

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