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Aliases for LINC01552 Gene

Subcategory (RNA class) for LINC01552 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01552 Gene

  • Long Intergenic Non-Protein Coding RNA 1552 2 3
  • C10orf115 3 4
  • Chromosome 10 Open Reading Frame 115 2
  • BA215C7.4 3

External Ids for LINC01552 Gene

Previous HGNC Symbols for LINC01552 Gene

  • C10orf115

Summaries for LINC01552 Gene

GeneCards Summary for LINC01552 Gene

LINC01552 (Long Intergenic Non-Protein Coding RNA 1552) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01552 Gene

Genomics for LINC01552 Gene

Genomic Location for LINC01552 Gene

Start:
23,203,816 bp from pter
End:
23,239,816 bp from pter
Size:
36,001 bases
Orientation:
Minus strand

Genomic View for LINC01552 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01552 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01552 Gene

No data available for Regulatory Elements for LINC01552 Gene

Proteins for LINC01552 Gene

  • Protein details for LINC01552 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5QP74-CJ115_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01552
    Protein Accession:
    Q5QP74
    Secondary Accessions:

    Protein attributes for LINC01552 Gene

    Size:
    94 amino acids
    Molecular mass:
    10344 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01552 Gene

Proteomics data for LINC01552 Gene at MOPED

Post-translational modifications for LINC01552 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01552 Gene

Domains for LINC01552 Gene

Protein Domains for LINC01552 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01552: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01552 Gene

Function for LINC01552 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01552 Gene

Localization for LINC01552 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01552 Gene

Pathways for LINC01552 Gene

SuperPathways for LINC01552 Gene

No Data Available

Interacting Proteins for LINC01552 Gene

Gene Ontology (GO) - Biological Process for LINC01552 Gene

None

No data available for Pathways by source for LINC01552 Gene

Transcripts for LINC01552 Gene

mRNA/cDNA for LINC01552 Gene

(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01552
    • Block miRNA regulation of LINC01552 using miScript Target Protectors

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LINC01552 Gene

    No ASD Table

    Relevant External Links for LINC01552 Gene

    GeneLoc Exon Structure for
    LINC01552
    ECgene alternative splicing isoforms for
    LINC01552

    Expression for LINC01552 Gene

    mRNA expression in normal human tissues for LINC01552 Gene

    Integrated Proteomics: protein expression from ProteomicsDB and MOPED for LINC01552 Gene

    genes like me logo Genes that share expressions with LINC01552: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for LINC01552 Gene

    Orthologs for LINC01552 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for LINC01552 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia C10orf115 36
    • 100 (a)
    OneToOne
    Species with no ortholog for LINC01552:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for LINC01552 Gene

    ENSEMBL:
    Gene Tree for LINC01552 (if available)
    TreeFam:
    Gene Tree for LINC01552 (if available)

    Paralogs for LINC01552 Gene

    No data available for Paralogs for LINC01552 Gene

    Variants for LINC01552 Gene

    Sequence variations from dbSNP and Humsavar for LINC01552 Gene

    SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
    rs927751 -- 23,217,600(+) GATGA(A/G)ATCAT intron-variant
    rs932774 -- 23,220,415(+) ACAGG(A/G)AGCAC intron-variant
    rs958425 -- 23,222,997(+) ACAGG(A/C)GCTTC intron-variant
    rs1319250 -- 23,240,169(+) CTGGA(C/T)GACAG upstream-variant-2KB
    rs1325588 -- 23,218,280(+) GGACT(A/G)CAGGT intron-variant

    Relevant External Links for LINC01552 Gene

    HapMap Linkage Disequilibrium report
    LINC01552

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01552 Gene

    Disorders for LINC01552 Gene

    No disorders were found for LINC01552 Gene.

    No data available for UniProtKB/Swiss-Prot for LINC01552 Gene

    Publications for LINC01552 Gene

    1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 4
    2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4

    Products for LINC01552 Gene

    Sources for LINC01552 Gene

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