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Aliases for LINC01551 Gene

Subcategory (RNA class) for LINC01551 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01551 Gene

  • Long Intergenic Non-Protein Coding RNA 1551 2 3 5
  • C14orf23 3 4
  • Chromosome 14 Open Reading Frame 23 2
  • C14_5148 3

External Ids for LINC01551 Gene

Previous HGNC Symbols for LINC01551 Gene

  • C14orf23

Summaries for LINC01551 Gene

GeneCards Summary for LINC01551 Gene

LINC01551 (Long Intergenic Non-Protein Coding RNA 1551) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01551 Gene

Genomics for LINC01551 Gene

Regulatory Elements for LINC01551 Gene

Enhancers for LINC01551 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G028769 1.5 dbSUPER 0.7 -3.2 -3198 0.4 CBX8 FOXA2 CBX2 FOXG1-AS1 LINC01551
GH14G028774 1.4 FANTOM5 ENCODE dbSUPER 0.7 +2.0 2040 0.5 CTCF SUZ12 ZNF2 RAD21 SMC3 ZNF600 PRDM10 ZBTB20 EZH2 ZNF263 FOXG1 LINC01551 LINC02282
GH14G028764 1.5 Ensembl ENCODE dbSUPER 0.4 -6.0 -6018 4.2 ZNF133 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 GATA2 KLF7 FOS ZNF263 FOXG1-AS1 LINC01551
GH14G028787 0.8 dbSUPER 0.7 +1.7 1680 0.1 CTCF SUZ12 RAD21 ZNF2 SMC3 ZNF600 PRDM10 ZBTB20 EZH2 ZNF263 LINC01551 LINC02282
GH14G028770 0.7 dbSUPER 0.7 -1.9 -1930 1.3 PKNOX1 FEZF1 ZNF384 ZNF316 GATA2 ZNF366 ZNF600 FOS MAFK NFE2L2 LINC01551 FOXG1-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01551 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01551 Gene

Chromosome:
14
Start:
28,772,704 bp from pter
End:
28,813,453 bp from pter
Size:
40,750 bases
Orientation:
Plus strand

Genomic View for LINC01551 Gene

Genes around LINC01551 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01551 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01551 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01551 Gene

Proteins for LINC01551 Gene

  • Protein details for LINC01551 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86U37-CN023_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01551
    Protein Accession:
    Q86U37
    Secondary Accessions:
    • A8MT64

    Protein attributes for LINC01551 Gene

    Size:
    167 amino acids
    Molecular mass:
    18828 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD62579.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LINC01551 Gene

Post-translational modifications for LINC01551 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for LINC01551 Gene

Domains & Families for LINC01551 Gene

Protein Domains for LINC01551 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01551: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01551 Gene

Function for LINC01551 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01551 Gene

Localization for LINC01551 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01551 gene
Compartment Confidence
mitochondrion 2
nucleus 2
extracellular 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LINC01551 Gene

Pathways & Interactions for LINC01551 Gene

SuperPathways for LINC01551 Gene

No Data Available

Interacting Proteins for LINC01551 Gene

Gene Ontology (GO) - Biological Process for LINC01551 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01551 Gene

Transcripts for LINC01551 Gene

mRNA/cDNA for LINC01551 Gene

(13) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01551 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5
SP1:
SP2: - -

Relevant External Links for LINC01551 Gene

GeneLoc Exon Structure for
LINC01551
ECgene alternative splicing isoforms for
LINC01551

Expression for LINC01551 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01551 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01551 Gene:

LINC01551
genes like me logo Genes that share expression patterns with LINC01551: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01551 Gene

Orthologs for LINC01551 Gene

Evolution for LINC01551 Gene

ENSEMBL:
Gene Tree for LINC01551 (if available)
TreeFam:
Gene Tree for LINC01551 (if available)

No data available for Orthologs for LINC01551 Gene

Paralogs for LINC01551 Gene

No data available for Paralogs for LINC01551 Gene

Variants for LINC01551 Gene

Sequence variations from dbSNP and Humsavar for LINC01551 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000010189 -- 28,792,014(+) TAGCT(A/G)GATCC nc-transcript-variant, downstream-variant-500B
rs1000035630 -- 28,775,753(+) TTGTT(C/G)TTTGA intron-variant
rs1000041248 -- 28,789,669(+) TTTTC(C/G)CATTG intron-variant
rs1000303833 -- 28,785,963(+) TAAAC(C/T)TGTTT intron-variant, upstream-variant-2KB
rs1000328222 -- 28,779,502(+) AGAAA(-/AT)ATATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01551 Gene

Variant ID Type Subtype PubMed ID
nsv1227 CNV insertion 18451855
nsv520282 CNV loss 19592680
nsv526536 CNV gain 19592680

Variation tolerance for LINC01551 Gene

Gene Damage Index Score: 0.57; 12.38% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01551 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01551

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01551 Gene

Disorders for LINC01551 Gene

Relevant External Links for LINC01551

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01551

No disorders were found for LINC01551 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01551 Gene

Publications for LINC01551 Gene

  1. Genetic variation influences glutamate concentrations in brains of patients with multiple sclerosis. (PMID: 20802204) Baranzini S.E. … Pelletier D. (Brain 2010) 3 64
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  3. The DNA sequence and analysis of human chromosome 14. (PMID: 12508121) Heilig R. … Weissenbach J. (Nature 2003) 4 64

Products for LINC01551 Gene

Sources for LINC01551 Gene

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