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Aliases for LINC01550 Gene

Subcategory (RNA class) for LINC01550 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01550 Gene

  • Long Intergenic Non-Protein Coding RNA 1550 2 3 5
  • Chromosome 14 Open Reading Frame 64 2
  • C14orf64 3

External Ids for LINC01550 Gene

Previous HGNC Symbols for LINC01550 Gene

  • C14orf64

Summaries for LINC01550 Gene

GeneCards Summary for LINC01550 Gene

LINC01550 (Long Intergenic Non-Protein Coding RNA 1550) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01550 Gene

Genomics for LINC01550 Gene

Regulatory Elements for LINC01550 Gene

Enhancers for LINC01550 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F097723 1 FANTOM5 Ensembl ENCODE 14.8 +252.6 252577 3.9 CTCF SMARCA4 LINC01550 LOC105370651 ENSG00000258869
GH14F097701 1.3 FANTOM5 Ensembl ENCODE 9.4 +272.1 272064 8.3 CTCF RAD21 ZNF316 EED NFE2 ETV6 CREM MAFK NFE2L2 MTA2 LINC01550 LOC105370651 LOC100129345
GH14F098166 1.2 FANTOM5 Ensembl ENCODE 9.8 -194.5 -194541 11.8 SOX5 SOX13 SRF PKNOX1 NFIA JUNB SMARCA4 EED ZNF26 MAFK RPL3P4 LINC01550 ENSG00000259097 LOC105370655
GH14F097975 0.7 ENCODE 7 +0.2 241 4.8 CTCF ZBTB40 RAD21 ZFHX2 CBX1 GATA3 POLR2A SMC3 FOXP2 EGR2 LINC01550 ENSG00000258379
GH14F097878 0.4 ENCODE 10.9 +99.1 99123 1.3 FOS LINC01550 ENSG00000258379
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01550 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01550 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000181479 424 2601 CTCF GATA3 CBX1 SMC3 FOXP2 ZBTB40 RAD21

Genomic Location for LINC01550 Gene

Chromosome:
14
Start:
97,925,610 bp from pter
End:
97,978,124 bp from pter
Size:
52,515 bases
Orientation:
Minus strand

Genomic View for LINC01550 Gene

Genes around LINC01550 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01550 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01550 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01550 Gene

Proteins for LINC01550 Gene

Post-translational modifications for LINC01550 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01550 Gene

Domains & Families for LINC01550 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01550 Gene

Function for LINC01550 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01550 Gene

Localization for LINC01550 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01550 Gene

Pathways & Interactions for LINC01550 Gene

SuperPathways for LINC01550 Gene

No Data Available

Interacting Proteins for LINC01550 Gene

Gene Ontology (GO) - Biological Process for LINC01550 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01550 Gene

Transcripts for LINC01550 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01550 Gene

No ASD Table

Relevant External Links for LINC01550 Gene

GeneLoc Exon Structure for
LINC01550
ECgene alternative splicing isoforms for
LINC01550

Expression for LINC01550 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01550 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01550 Gene:

LINC01550
genes like me logo Genes that share expression patterns with LINC01550: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LINC01550 Gene

Orthologs for LINC01550 Gene

Evolution for LINC01550 Gene

ENSEMBL:
Gene Tree for LINC01550 (if available)
TreeFam:
Gene Tree for LINC01550 (if available)

No data available for Orthologs for LINC01550 Gene

Paralogs for LINC01550 Gene

No data available for Paralogs for LINC01550 Gene

Variants for LINC01550 Gene

Sequence variations from dbSNP and Humsavar for LINC01550 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10132704 -- 97,937,686(+) GAGCC(A/T)TCTCC intron-variant
rs10138524 -- 97,954,032(+) CTGGT(C/T)GCGAA intron-variant
rs10138576 -- 97,961,213(+) ATGGT(A/G)GAACA intron-variant
rs10139779 -- 97,979,225(+) TTTGT(C/G)ACAAA upstream-variant-2KB
rs10143394 -- 97,941,542(+) CACAA(C/T)GTCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01550 Gene

Variant ID Type Subtype PubMed ID
nsv832868 CNV gain+loss 17160897
esv3581402 CNV loss 25503493
esv2669181 CNV deletion 23128226

Variation tolerance for LINC01550 Gene

Gene Damage Index Score: 0.33; 7.38% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01550 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01550

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LINC01550 Gene

Disorders for LINC01550 Gene

Relevant External Links for LINC01550

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01550

No disorders were found for LINC01550 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01550 Gene

Publications for LINC01550 Gene

  1. Robust evidence for five new Graves' disease risk loci from a staged genome-wide association analysis. (PMID: 23612905) Zhao S.X. … Song H.D. (Hum. Mol. Genet. 2013) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LINC01550 Gene

Sources for LINC01550 Gene

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