Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01547 Gene

Subcategory (RNA class) for LINC01547 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01547 Gene

  • Long Intergenic Non-Protein Coding RNA 1547 2 3
  • C21orf67 3 4
  • C21orf69 3 4
  • Chromosome 21 Open Reading Frame 69 2
  • Chromosome 21 Open Reading Frame 67 2
  • PRED54 3

External Ids for LINC01547 Gene

Previous HGNC Symbols for LINC01547 Gene

  • C21orf69
  • C21orf67

Summaries for LINC01547 Gene

GeneCards Summary for LINC01547 Gene

LINC01547 (Long Intergenic Non-Protein Coding RNA 1547) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01547 Gene

Genomics for LINC01547 Gene

Genomic Location for LINC01547 Gene

Start:
44,932,814 bp from pter
End:
44,939,913 bp from pter
Size:
7,100 bases
Orientation:
Minus strand

Genomic View for LINC01547 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01547 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01547 Gene

No data available for Regulatory Elements for LINC01547 Gene

Proteins for LINC01547 Gene

  • Protein details for LINC01547 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P58512-CU067_HUMAN
    Recommended name:
    Uncharacterized protein encoded by LINC01547
    Protein Accession:
    P58512
    Secondary Accessions:
    • P58556
    • Q495D3
    • Q495D5

    Protein attributes for LINC01547 Gene

    Size:
    204 amino acids
    Molecular mass:
    21308 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAK60445.1; Type=Erroneous translation; Note=Wrong choice of CDS.; Evidence={ECO:0000305};

    Alternative splice isoforms for LINC01547 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LINC01547 Gene

Proteomics data for LINC01547 Gene at MOPED

Post-translational modifications for LINC01547 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01547 Gene

Domains for LINC01547 Gene

Protein Domains for LINC01547 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01547: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01547 Gene

Function for LINC01547 Gene

Phenotypes for LINC01547 Gene

genes like me logo Genes that share phenotypes with LINC01547: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01547 Gene

Localization for LINC01547 Gene

Gene Ontology (GO) - Cellular Components for LINC01547 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IDA 16780588
genes like me logo Genes that share ontologies with LINC01547: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for LINC01547 Gene

Pathways for LINC01547 Gene

SuperPathways for LINC01547 Gene

No Data Available

Interacting Proteins for LINC01547 Gene

Gene Ontology (GO) - Biological Process for LINC01547 Gene

None

No data available for Pathways by source for LINC01547 Gene

Transcripts for LINC01547 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01547 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7
SP1: -
SP2: - - - -
SP3: -
SP4:

Relevant External Links for LINC01547 Gene

GeneLoc Exon Structure for
LINC01547
ECgene alternative splicing isoforms for
LINC01547

Expression for LINC01547 Gene

mRNA expression in normal human tissues for LINC01547 Gene

mRNA Expression by UniProt/SwissProt for LINC01547 Gene

P58512-CU067_HUMAN
Tissue specificity: Not detected in any tissue tested
genes like me logo Genes that share expressions with LINC01547: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein expression for LINC01547 Gene

Orthologs for LINC01547 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01547 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C21orf67 36
  • 96 (a)
OneToOne
Species with no ortholog for LINC01547:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01547 Gene

ENSEMBL:
Gene Tree for LINC01547 (if available)
TreeFam:
Gene Tree for LINC01547 (if available)

Paralogs for LINC01547 Gene

No data available for Paralogs for LINC01547 Gene

Variants for LINC01547 Gene

Sequence variations from dbSNP and Humsavar for LINC01547 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type MAF
rs2297280 -- 44,934,792(+) GGAGC(A/T)GGGCT intron-variant, nc-transcript-variant
rs4818989 -- 44,936,901(+) TAGCC(A/G)ACAGA intron-variant
rs4818990 -- 44,937,444(+) AGGAG(G/T)TCACC intron-variant
rs4818991 -- 44,937,450(+) tcacc(A/G)ttaca intron-variant
rs4818992 -- 44,937,782(+) ctagc(A/C)actgg intron-variant

Relevant External Links for LINC01547 Gene

HapMap Linkage Disequilibrium report
LINC01547

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01547 Gene

Disorders for LINC01547 Gene

No disorders were found for LINC01547 Gene.

No data available for UniProtKB/Swiss-Prot for LINC01547 Gene

Publications for LINC01547 Gene

  1. From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map. (PMID: 11707072) Reymond A. … Antonarakis S.E. (Genomics 2001) 2 3 4 23
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins. (PMID: 16780588) Hu Y.H. … Janitz M. (BMC Genomics 2006) 3

Products for LINC01547 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LINC01547
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LINC01547
    • Block miRNA regulation of LINC01547 using miScript Target Protectors

    Sources for LINC01547 Gene

    Back to Top

    Content