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Aliases for LINC01545 Gene

Subcategory (RNA class) for LINC01545 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01545 Gene

  • Long Intergenic Non-Protein Coding RNA 1545 2 3 5
  • CXorf31 3 4
  • Chromosome X Open Reading Frame 31 2

External Ids for LINC01545 Gene

Previous HGNC Symbols for LINC01545 Gene

  • CXorf31

Summaries for LINC01545 Gene

GeneCards Summary for LINC01545 Gene

LINC01545 (Long Intergenic Non-Protein Coding RNA 1545) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01545 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01545 Gene

Genomics for LINC01545 Gene

Regulatory Elements for LINC01545 Gene

Enhancers for LINC01545 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH046903 1.2 Ensembl ENCODE 0.7 -4.2 -4232 1 PKNOX1 ARID4B SIN3A ZNF2 GLIS2 ZNF143 MXD4 REST NBN KDM1A SLC9A7 LINC01545 JADE3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01545 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01545 Gene

Chromosome:
X
Start:
46,887,417 bp from pter
End:
46,899,704 bp from pter
Size:
12,288 bases
Orientation:
Minus strand

Genomic View for LINC01545 Gene

Genes around LINC01545 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01545 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01545 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01545 Gene

Proteins for LINC01545 Gene

  • Protein details for LINC01545 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VT33-CX031_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01545
    Protein Accession:
    Q5VT33

    Protein attributes for LINC01545 Gene

    Size:
    79 amino acids
    Molecular mass:
    9515 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01545 Gene

Post-translational modifications for LINC01545 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01545 Gene

Domains & Families for LINC01545 Gene

Protein Domains for LINC01545 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01545: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01545 Gene

Function for LINC01545 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for LINC01545
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01545 Gene

Localization for LINC01545 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01545 gene
Compartment Confidence
nucleus 2
mitochondrion 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01545 Gene

Pathways & Interactions for LINC01545 Gene

SuperPathways for LINC01545 Gene

No Data Available

Interacting Proteins for LINC01545 Gene

Gene Ontology (GO) - Biological Process for LINC01545 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01545 Gene

Drugs & Compounds for LINC01545 Gene

No Compound Related Data Available

Transcripts for LINC01545 Gene

mRNA/cDNA for LINC01545 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for LINC01545
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01545 Gene

No ASD Table

Relevant External Links for LINC01545 Gene

GeneLoc Exon Structure for
LINC01545
ECgene alternative splicing isoforms for
LINC01545

Expression for LINC01545 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01545 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01545 Gene:

LINC01545
genes like me logo Genes that share expression patterns with LINC01545: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01545 Gene

Orthologs for LINC01545 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01545 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CXorf31 34
  • 99 (a)
OneToOne
Species where no ortholog for LINC01545 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01545 Gene

ENSEMBL:
Gene Tree for LINC01545 (if available)
TreeFam:
Gene Tree for LINC01545 (if available)

Paralogs for LINC01545 Gene

No data available for Paralogs for LINC01545 Gene

Variants for LINC01545 Gene

Sequence variations from dbSNP and Humsavar for LINC01545 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000361441 -- 46,894,304(+) TATTT(A/C)TCTTT intron-variant
rs1000912176 -- 46,896,924(+) CTGTC(A/G)CGTGA intron-variant
rs1001250074 -- 46,897,255(+) TTCAC(A/G)GAAGA intron-variant
rs1001809391 -- 46,900,572(+) GGCAG(A/G)AGAAT upstream-variant-2KB
rs1001902570 -- 46,888,202(+) ACAGA(A/G)AACAA intron-variant

Variation tolerance for LINC01545 Gene

Gene Damage Index Score: 0.01; 0.12% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LINC01545 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01545

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01545 Gene

Disorders for LINC01545 Gene

Relevant External Links for LINC01545

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01545

No disorders were found for LINC01545 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01545 Gene

Publications for LINC01545 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LINC01545 Gene

Sources for LINC01545 Gene

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