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Aliases for LINC01545 Gene

Subcategory (RNA class) for LINC01545 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01545 Gene

  • Long Intergenic Non-Protein Coding RNA 1545 2 3
  • CXorf31 3 4
  • Chromosome X Open Reading Frame 31 2

External Ids for LINC01545 Gene

Previous HGNC Symbols for LINC01545 Gene

  • CXorf31

Summaries for LINC01545 Gene

GeneCards Summary for LINC01545 Gene

LINC01545 (Long Intergenic Non-Protein Coding RNA 1545) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01545 Gene

Genomics for LINC01545 Gene

Genomic Location for LINC01545 Gene

Start:
46,887,417 bp from pter
End:
46,899,704 bp from pter
Size:
12,288 bases
Orientation:
Minus strand

Genomic View for LINC01545 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LINC01545 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01545 Gene

No data available for Regulatory Elements for LINC01545 Gene

Proteins for LINC01545 Gene

  • Protein details for LINC01545 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VT33-CX031_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01545
    Protein Accession:
    Q5VT33
    Secondary Accessions:

    Protein attributes for LINC01545 Gene

    Size:
    79 amino acids
    Molecular mass:
    9515 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01545 Gene

Proteomics data for LINC01545 Gene at MOPED

Post-translational modifications for LINC01545 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01545 Gene

Domains for LINC01545 Gene

Protein Domains for LINC01545 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01545: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01545 Gene

Function for LINC01545 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LINC01545 Gene

Localization for LINC01545 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01545 Gene

Pathways for LINC01545 Gene

SuperPathways for LINC01545 Gene

No Data Available

Interacting Proteins for LINC01545 Gene

Gene Ontology (GO) - Biological Process for LINC01545 Gene

None

No data available for Pathways by source for LINC01545 Gene

Transcripts for LINC01545 Gene

mRNA/cDNA for LINC01545 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01545 Gene

No ASD Table

Relevant External Links for LINC01545 Gene

GeneLoc Exon Structure for
LINC01545
ECgene alternative splicing isoforms for
LINC01545

Expression for LINC01545 Gene

mRNA expression in normal human tissues for LINC01545 Gene

genes like me logo Genes that share expressions with LINC01545: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for LINC01545 Gene

Orthologs for LINC01545 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01545 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CXorf31 36
  • 99 (a)
OneToOne
Species with no ortholog for LINC01545:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LINC01545 Gene

ENSEMBL:
Gene Tree for LINC01545 (if available)
TreeFam:
Gene Tree for LINC01545 (if available)

Paralogs for LINC01545 Gene

No data available for Paralogs for LINC01545 Gene

Variants for LINC01545 Gene

Sequence variations from dbSNP and Humsavar for LINC01545 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs5902381 -- 46,888,089(+) TTTTT(-/T)GCATT intron-variant
rs5905571 -- 46,900,963(+) AAAAA(A/G)TTAGT upstream-variant-2KB
rs5952970 -- 46,900,221(+) tgttt(A/G)cataa upstream-variant-2KB
rs6611310 -- 46,894,054(+) AGGAA(C/G)TGGAA intron-variant
rs6611311 -- 46,900,838(+) TAACA(G/T)GTATT upstream-variant-2KB

Relevant External Links for LINC01545 Gene

HapMap Linkage Disequilibrium report
LINC01545

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LINC01545 Gene

Disorders for LINC01545 Gene

No disorders were found for LINC01545 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for LINC01545 Gene

Publications for LINC01545 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for LINC01545 Gene

Sources for LINC01545 Gene

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