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Aliases for LINC01515 Gene

Subcategory (RNA class) for LINC01515 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01515 Gene

  • Long Intergenic Non-Protein Coding RNA 1515 2 3 5

External Ids for LINC01515 Gene

Summaries for LINC01515 Gene

GeneCards Summary for LINC01515 Gene

LINC01515 (Long Intergenic Non-Protein Coding RNA 1515) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01515 Gene

Genomics for LINC01515 Gene

Regulatory Elements for LINC01515 Gene

Enhancers for LINC01515 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G065569 0.9 ENCODE 20.5 +0.7 726 2.3 PKNOX1 SIN3A DMAP1 ZNF2 RAD21 RFX5 ZNF366 SCRT2 ZNF263 SP5 LINC01515 GC10P065782
GH10G065234 0.4 ENCODE 5 -335.4 -335356 1.8 SCRT2 LINC01515 GC10P065240 GC10M065206
GH10G065518 0.5 ENCODE 0.2 -51.5 -51532 1.2 ZNF692 ZNF366 CREB1 ATF2 LOC105378337 LINC01515
GH10G065684 0.2 ENCODE 0.1 +114.7 114735 1.4 GC10P065782 LINC01515
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01515 on UCSC Golden Path with GeneCards custom track

Promoters for LINC01515 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000029050 563 1399 PKNOX1 MLX INSM2 SIN3A DMAP1 ZNF2 RAD21 RFX5 ZNF366 SCRT2

Genomic Location for LINC01515 Gene

Chromosome:
10
Start:
65,570,338 bp from pter
End:
65,768,835 bp from pter
Size:
198,498 bases
Orientation:
Plus strand

Genomic View for LINC01515 Gene

Genes around LINC01515 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01515 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01515 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01515 Gene

Proteins for LINC01515 Gene

Post-translational modifications for LINC01515 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01515 Gene

Domains & Families for LINC01515 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01515 Gene

Function for LINC01515 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01515 Gene

Localization for LINC01515 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LINC01515 Gene

Pathways & Interactions for LINC01515 Gene

SuperPathways for LINC01515 Gene

No Data Available

Interacting Proteins for LINC01515 Gene

Gene Ontology (GO) - Biological Process for LINC01515 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01515 Gene

Drugs & Compounds for LINC01515 Gene

No Compound Related Data Available

Transcripts for LINC01515 Gene

mRNA/cDNA for LINC01515 Gene

(20) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01515 Gene

No ASD Table

Relevant External Links for LINC01515 Gene

GeneLoc Exon Structure for
LINC01515
ECgene alternative splicing isoforms for
LINC01515

Expression for LINC01515 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01515 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01515 Gene:

LINC01515
genes like me logo Genes that share expression patterns with LINC01515: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01515 Gene

Orthologs for LINC01515 Gene

Evolution for LINC01515 Gene

ENSEMBL:
Gene Tree for LINC01515 (if available)
TreeFam:
Gene Tree for LINC01515 (if available)

No data available for Orthologs for LINC01515 Gene

Paralogs for LINC01515 Gene

No data available for Paralogs for LINC01515 Gene

Variants for LINC01515 Gene

Sequence variations from dbSNP and Humsavar for LINC01515 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000001317 -- 65,707,022(+) AATAA(A/C)CGTCA intron-variant
rs1000033532 -- 65,613,190(+) TTCCA(A/C)ACCAA intron-variant
rs1000036090 -- 65,762,739(+) ATAAC(A/T)TTGCC intron-variant
rs1000060182 -- 65,696,922(+) AAAAC(A/G)AAAAC intron-variant
rs1000060808 -- 65,750,751(+) ACATA(C/T)ATATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01515 Gene

Variant ID Type Subtype PubMed ID
dgv1220n54 CNV loss 21841781
dgv1221n54 CNV loss 21841781
dgv157n67 CNV loss 20364138
dgv36n111 CNV deletion 26073780
dgv888n100 CNV gain 25217958
dgv889n100 CNV loss 25217958
dgv891n100 CNV loss 25217958
esv23052 CNV loss 19812545
esv23695 CNV loss 19812545
esv2421464 CNV deletion 20811451
esv2656943 CNV deletion 23128226
esv2665501 CNV deletion 23128226
esv2676407 CNV deletion 23128226
esv2676433 CNV deletion 23128226
esv2760098 CNV loss 21179565
esv2760105 CNV loss 21179565
esv3304828 CNV mobile element insertion 20981092
esv3309021 CNV mobile element insertion 20981092
esv3338361 CNV insertion 20981092
esv3340546 CNV insertion 20981092
esv3623574 CNV loss 21293372
esv3623575 CNV loss 21293372
esv3623577 CNV loss 21293372
esv3623578 CNV loss 21293372
esv3623580 CNV loss 21293372
esv6809 OTHER inversion 19470904
nsv1035758 CNV loss 25217958
nsv1037793 CNV loss 25217958
nsv1041840 CNV loss 25217958
nsv1043327 CNV gain 25217958
nsv1047351 CNV gain 25217958
nsv1048766 CNV loss 25217958
nsv1125334 OTHER inversion 24896259
nsv437121 CNV loss 16327808
nsv437686 CNV loss 16327808
nsv437687 CNV loss 16327808
nsv442584 CNV loss 18776908
nsv467305 CNV loss 19166990
nsv467307 CNV loss 19166990
nsv508588 CNV deletion 20534489
nsv514569 CNV gain+loss 21397061
nsv520171 CNV loss 19592680
nsv551252 CNV loss 21841781
nsv551285 CNV loss 21841781
nsv551286 CNV loss 21841781
nsv551287 CNV loss 21841781
nsv551288 CNV loss 21841781
nsv551295 CNV loss 21841781
nsv551296 CNV loss 21841781
nsv6909 CNV insertion 18451855
nsv825434 CNV loss 20364138
nsv825435 CNV loss 20364138
nsv831899 CNV gain 17160897

Relevant External Links for LINC01515 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01515

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01515 Gene

Disorders for LINC01515 Gene

Relevant External Links for LINC01515

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01515

No disorders were found for LINC01515 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01515 Gene

Publications for LINC01515 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for LINC01515 Gene

Sources for LINC01515 Gene

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