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Aliases for LINC01480 Gene

Subcategory (RNA class) for LINC01480 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01480 Gene

  • Long Intergenic Non-Protein Coding RNA 1480 2 3 5

External Ids for LINC01480 Gene

Summaries for LINC01480 Gene

GeneCards Summary for LINC01480 Gene

LINC01480 (Long Intergenic Non-Protein Coding RNA 1480) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01480 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01480 Gene

Genomics for LINC01480 Gene

Regulatory Elements for LINC01480 Gene

Enhancers for LINC01480 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H041529 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.5 -3.7 -3738 2 PKNOX1 ATF1 GLIS2 ATF7 RUNX3 SP3 JUNB ZNF518A CBX8 GLIS1 PCAT19 ZNF574 DMAC2 ERICH4 CIC LINC01480 NUMBL TGFB1 ARHGEF1 CCDC97
GH19H041545 1.5 FANTOM5 Ensembl ENCODE dbSUPER 7.9 +11.1 11132 2 HDGF GABPA ZNF83 POLR2A EED ZNF143 ETV6 SPI1 DMAC2 ERICH4 LINC01480 ENSG00000268355 EXOSC5 PCAT19 CEACAM21 ARHGEF1 CD79A B9D2
GH19H041430 1.7 VISTA ENCODE dbSUPER 6.5 -103.4 -103382 2 HDGF ATF1 ARNT ZSCAN4 ZNF133 GLI4 RAD21 YY1 TCF12 GATA2 SNRPA ZNF526 ENSG00000269843 HNRNPUL1 EXOSC5 CCDC97 ITPKC B9D2 TGFB1 TMEM91
GH19H041547 1.4 Ensembl ENCODE dbSUPER 7.6 +17.5 17544 10 HDAC1 HDGF PKNOX1 ZBTB7B SCRT2 ETV6 RUNX3 CREM IKZF2 ZNF362 CEACAMP3 CEACAM21 DMAC2 ERICH4 EXOSC5 BCKDHA LINC01480 ENSG00000268355 TMEM91 ENSG00000259436
GH19H041499 1.3 Ensembl ENCODE 7.8 -34.3 -34320 2 SIN3A FEZF1 ZNF2 ELK1 ZNF302 FOS KLF7 ATF7 SP3 YY2 NUMBL CYP2G1P SNRPA HNRNPUL1 PCAT19 ZNF526 CCDC97 MEGF8 ENSG00000269843 ZNF574
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LINC01480 on UCSC Golden Path with GeneCards custom track

Genomic Location for LINC01480 Gene

Chromosome:
19
Start:
41,535,183 bp from pter
End:
41,536,904 bp from pter
Size:
1,722 bases
Orientation:
Plus strand

Genomic View for LINC01480 Gene

Genes around LINC01480 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01480 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01480 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01480 Gene

Proteins for LINC01480 Gene

Post-translational modifications for LINC01480 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01480 Gene

Domains & Families for LINC01480 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01480 Gene

Function for LINC01480 Gene

Phenotypes From GWAS Catalog for LINC01480 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01480 Gene

Localization for LINC01480 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01480 Gene

Pathways & Interactions for LINC01480 Gene

SuperPathways for LINC01480 Gene

No Data Available

Interacting Proteins for LINC01480 Gene

Gene Ontology (GO) - Biological Process for LINC01480 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01480 Gene

Drugs & Compounds for LINC01480 Gene

No Compound Related Data Available

Transcripts for LINC01480 Gene

mRNA/cDNA for LINC01480 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01480 Gene

No ASD Table

Relevant External Links for LINC01480 Gene

GeneLoc Exon Structure for
LINC01480
ECgene alternative splicing isoforms for
LINC01480

Expression for LINC01480 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01480 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01480 Gene:

LINC01480
genes like me logo Genes that share expression patterns with LINC01480: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01480 Gene

Orthologs for LINC01480 Gene

Evolution for LINC01480 Gene

ENSEMBL:
Gene Tree for LINC01480 (if available)
TreeFam:
Gene Tree for LINC01480 (if available)

No data available for Orthologs for LINC01480 Gene

Paralogs for LINC01480 Gene

No data available for Paralogs for LINC01480 Gene

Variants for LINC01480 Gene

Sequence variations from dbSNP and Humsavar for LINC01480 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1001563624 -- 41,534,919(+) AAGTA(C/T)AAAAA upstream-variant-2KB
rs1001845485 -- 41,536,428(+) AAAGT(G/T)ATGGG intron-variant
rs1001929574 -- 41,535,114(+) ACAAA(A/G)CCCGG upstream-variant-2KB
rs1003127473 -- 41,537,282(+) AATGG(C/G)AAACT downstream-variant-500B
rs1003346475 -- 41,536,383(+) AAGGG(A/C)AGGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01480 Gene

Variant ID Type Subtype PubMed ID
nsv1055515 CNV loss 25217958
nsv2493 CNV insertion 18451855
nsv510767 CNV deletion 20534489
nsv579602 CNV loss 21841781

Relevant External Links for LINC01480 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01480

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01480 Gene

Disorders for LINC01480 Gene

Relevant External Links for LINC01480

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LINC01480

No disorders were found for LINC01480 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01480 Gene

Publications for LINC01480 Gene

No publications were found for LINC01480 Gene.

Products for LINC01480 Gene

Sources for LINC01480 Gene

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